Detailed information on CNT3019826


BLAST search results

BLAST vs Swiss-Prot:
sp|P92980|APR3_ARATH, E-value = 2e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513945Citrullus lanatusJuglans regia80.3639.7579.64221forward
CNT30273403Citrullus lanatusChenopodium quinoa46.556.6983.59128forward
CNT3044335Citrullus lanatusPrunus dulcis45.4532.5584.8125forward
CNT30218205Citrullus lanatusKalanchoe fedtschenkoi50.9119.1383.57140forward

Expression of CNT3019826

Peptides detected in this lncRNA

>peptide 1 (75 aa)
SLSFVLPGKDRHIHGSQEVPYVFTIDIGNWVPLNQAPNATIQSFKNRINLDNRDFRPSSRRLVFSLSSDPCSESL*

>peptide 2 (33 aa)
VPLFRAAREGQAHSWFARSSIRLYHRHWQLGST*

>peptide 3 (90 aa)
RPSLSCCPGRTGTFMVRKKFHTSLPSTLATGFHLIKLPMPPSNPSKTGSTWTTGISDLVPGDWSFLCPVIHARSPFKALLKGLTFLTRQHS

Sequence

>CNT3019826
CGTCCCTCTCTTTCGTGCTGCCCGGGAAGGACAGGCACATTCATGGTTCGCAAGAAGTTCCATACGTCTTTACCATCGACATTGGCAACTGGGTTCCACT
TAATCAAGCTCCCAATGCCACCATCCAATCCTTCAAAAACAGGATCAACTTGGACAACAGGGATTTCAGACCTAGTTCCAGGAGATTGGTCTTTTCTTTG
TCCAGTGATCCATGCTCGGAGTCCCTTTAAAGCCCTCCTCAAAGGCCTCACCTTCCTTACTCGGCAGCACTCCTG