Detailed information on CNT30405621


BLAST search results

BLAST vs Swiss-Prot:
sp|P02398|RK12_SPIOL, E-value = 2e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3091771Beta vulgarisSolanum tuberosum43.6127.1481.98222forward
CNT30508927Beta vulgarisSolanum lycopersicum44.7927.9882.02228forward

Expression of CNT30405621

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MGRKRVVRVEERESGLLLRKGNWREWEEREGRLRVESVAVAIFSLLFRTEERK*

>peptide 2 (71 aa)
PFLQFLRQTLNQFFSLFKAEASQNPNSLNNSNSSIARNFIDGDIKLSLFLDNRCSIGTRSTRSSDNSSRSE*

>peptide 3 (97 aa)
PSFNFLGKPSINSLASLRPRLVKTLTALITAILALLGTSSMETSNSVFSSTTGAASAPGAPGAATTAAGANDAAETPNLSWSQSTRTLASSKVRPDS*

Sequence

>CNT30405621
CCCCTTCCTTCAATTTCTTAGGCAAACCCTCAATCAATTCTTTAGCCTCTTTAAGGCCGAGGCTAGTCAAAACCCTAACAGCCTTAATAACAGCAATTCT
AGCATTGCTAGGAACTTCATCGATGGAGACATCAAACTCAGTCTTTTCCTCGACAACAGGTGCAGCATCGGCACCAGGAGCACCAGGAGCAGCGACAACA
GCAGCAGGAGCGAATGATGCGGCTGAGACACCCAACTTGTCCTGGAGCCAGTCGACGAGAACCCTGGCTTCTTCCAAAGTGAGGCCGGACAGCTGAGTGC
CCAGTTGTTCGATTTTCTCAGGGGCCTCAACGGCAGAAATGGGGCGCAAACGGGTGGTGCGAGTTGAGGAGAGAGAAAGTGGGTTGTTGTTGCGGAAGGG
GAATTGGAGAGAGTGGGAGGAGAGAGAAGGAAGGTTGAGGGTTGAGAGTGTTGCTGTTGCCATTTTTTCTCTCTTGTTTAGGACTGAAGAGAGGAAATGA
GAGGATAGA