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Detailed information on CNT30503719


BLAST search results

BLAST vs Swiss-Prot:
sp|P27496|CB25_TOBAC, E-value = 3e-128

BLAST vs NONCODE:
NONSTUT001352, E-value = 9e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3046617Nicotiana attenuataPrunus dulcis59.3250.9584350forward
CNT3095911Nicotiana attenuataSolanum tuberosum89.4959.4690.15528forward
CNT30543163Nicotiana attenuataBrassica napus52.263.6483.12308forward
CNT30235793Nicotiana attenuataBrassica oleracea65.0866.3282.03384forward

Expression of CNT30503719

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MDQAWVAQVVKSTLAENLGSSLEPYSLTEFDTITSQELRKDATKSSKHGPSAMDHL*

>peptide 2 (30 aa)
MVTFPFPLISEEDGESFTAFPAKEEEERAIV

>peptide 3 (29 aa)
MAHLQWITSSSRFLAKVSGSAESPAVSQP*

Sequence

>CNT30503719
TAAGAAAAAGTGATAATTTTTAAGAATTTCACTTTCCGGGGACAAAGTTTGTGGCATAGGACCAGCAACACGATAACCCTCAACAGCTCCCATTAACACG
ACTTGACAAGCCCAAATGGCCAAGATACTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAAATTTGGGATCCAGCCT
TGAACCATACAGCCTCACCGAATTTGACACCATTACGAGCCAAGAGCTCAGGAAAGACGCAACCAAGAGCTCCAAGCATGGCCCATCTGCAATGGATCAC
CTCTAGCTCACGATTCTTAGCAAAAGTTTCTGGATCAGCTGAAAGTCCAGCAGTGTCCCAACCGTAGTCACCAGGGAACTCACCAGTCAAGTAGCTTGGG
GACTCACCGGAGAATGGGCCCAAGTACTTGACACGATCAGGACCATACCATGGGCTGCCAGAAGAGACTGGCTTCGCCTTGGTCACAGTCTTCCTCATGG
TGACTTTTCCATTTCCACTGATCTCAGAGGAAGATGGTGAGAGTTTCACCGCCTTTCCGGCAAAAGAAGAGGAAGAGAGAGCCATTGTTG