Detailed information on CNT3095911


BLAST search results

BLAST vs Swiss-Prot:
sp|P07369|CB2G_SOLLC, E-value = 2e-118

BLAST vs NONCODE:
NONSTUT001352, E-value = 1e-60

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30503719Solanum tuberosumNicotiana attenuata59.4689.4990.15528forward

Expression of CNT3095911

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MDQTWVSQVIKSTFTENLGSSFEPNSLTKLYTVTGQKLRKDTAKSSKHGPSTMDHLQLTVLGKISGSAESPAVSHP*

>peptide 2 (61 aa)
MGPMGRSYHQDKVGQQLHQEAHQQYGNPQRLPSTQLDKPKWPRYFVHGPNLGFPSNQVHLH*

>peptide 3 (50 aa)
MAHLQWITSNSRFLAKFLDQLKVQQCPIRSHQETHQSSSLGLHQRMGPNT*

>peptide 4 (32 aa)
MVNLPFPVISEEDGESFTAFPANVDEERAIVAA

>peptide 5 (30 aa)
MELHNIEDQIKIHIESPLIYNSLLYRAIKY*

Sequence

>CNT3095911
GAAGATTATATTAATGATATAATGCAAACACATCTAACCTGAAAATTCAACCTCATAACACTATTGCAAAATGTAAATATAAAATAATATTATGGAACTA
CACAATATTGAAGATCAAATAAAAATTCATATAGAATCTCCACTAATTTACAATAGCTTGCTTTACAGGGCTATCAAATACTAGAAGACTAGTCTATTTT
AAGAACTTCACTTTCCGGGAACAAAGTTTGTGGCAAAAGCCCATGCGTTGTTGTTAACTGGATCAGCAAGGTGATCTGCAAGATTTTCCAATGGGCCCAA
TGGGTCGAAGCTACCACCAGGATAAAGTGGGTCAACAACTTCACCAAGAGGCCCACCAGCAATACGGTAACCCTCAACGGCTCCCATCAACACAACTTGA
CAAGCCCAAATGGCCAAGATACTTTGTGCATGGACCAAACTTGGGTTTCCCAAGTAATCAAGTCCACCTTCACTGAAAATTTGGGATCCAGCTTTGAACC
AAACAGCCTCACCAAACTTTACACCGTTACGGGCCAAAAGCTCAGGAAAGACACAGCCAAGAGCTCCAAGCATGGCCCATCTACAATGGATCACCTCCAA
CTCACGGTTCTTGGCAAAATTTCTGGATCAGCTGAAAGTCCAGCAGTGTCCCATCCGTAGTCACCAGGAAACTCACCAGTCAAGTAGCTTGGGGCTTCAC
CAGAGAATGGGCCCAAATACTTGACACGGTCAGGACCATACCATGGACTACCAGAAGAGACAGGCTTGGCCTTGGTGGCAGTCTTCCTCATGGTGAATCT
TCCATTTCCGGTGATTTCAGAAGAAGACGGTGAGAGTTTTACTGCCTTTCCGGCAAATGTAGATGAAGAAAGAGCCATTGTAGCTGCA