Detailed information on CNT30543163


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 8e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30503719Brassica napusNicotiana attenuata63.6452.283.12308forward
CNT30709062Brassica napusGlycine max63.6438.2184.74308forward
CNT30235793Brassica napusBrassica oleracea82.6469.0897400forward
CNT30261121Brassica napusBrassica rapa61.7874.0197.32299forward
CNT30217700Brassica napusKalanchoe fedtschenkoi65.540.1884.23317forward
CNT30153357Brassica napusPrunus persica66.1218.1282.81320forward
CNT30176338Brassica napusVigna angularis53.3128.4585.66258forward

Expression of CNT30543163

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWITSSSRFLAKVSGSADRPAVSHP*

>peptide 2 (43 aa)
SETQWVKAASWVKQVLGLSQWSLSGNSVTLNSSHEDHLSSPNG*

>peptide 3 (30 aa)
MGQSCLLGKASPRPLPMVPLRQLCNPQQLP*

Sequence

>CNT30543163
TAGCGAGACCCAATGGGTCAAAGCTGCCTCCTGGGTAAAGCAAGTCCTCGGCCTCTCCCAATGGTCCCTCTCCGGCAACTCTGTAACCCTCAACAGCTCC
CATGAGGATCACCTGAGTAGCCCAAATGGCTAAGATGCTCTGAGCGTGGACCAAGCTCGGGTTGCCCAAGTAGTCGAGTCCTCCTTCGCTGAAGATCTGT
GAACCAGCCTTGAACCAAACCGCTTCTCCGAACTTGACTCCGTTACGAGCCAAGAGCTCAGGGAAAACGCAGCCTAGGGCTCCGAGCATGGCCCACCTGC
AGTGGATAACTTCTAGCTCACGGTTCCTGGCGAAGGTCTCGGGGTCGGCTGATAGACCGGCGGTGTCCCATCCGTAGTCACCAGGGAACTCTCCGGTAAG
GCAGGGGAGGAGAGAGCCATGGTTGAGGCAGCCATTAGAACGTTTCTTCTTTTTTGTTGATTTTATGGGTTTTTTTTTGTGACT