Detailed information on CNT30497939


BLAST search results

BLAST vs Swiss-Prot:
sp|P27789|FER5_MAIZE, E-value = 7e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676003Digitaria exilisSetaria viridis38.9542.7293.77305forward
CNT30523578Digitaria exilisSetaria italica38.9526.7194.1305forward
CNT30306166Digitaria exilisTriticum aestivum39.4663.3287.38309forward
CNT30227182Digitaria exilisHordeum vulgare39.4632.7388.35309forward
CNT30591745Digitaria exilisMusa acuminata13.2823.1684.62104forward
CNT30256898Digitaria exilisAvena sativa39.4636.7487.38309forward
CNT30468742Digitaria exilisSaccharum spontaneum39.3446.3292.86308forward
CNT30140637Digitaria exilisLolium perenne39.8546.586.22312forward
CNT3010346Digitaria exilisZea mays38.9549.5191.8305forward
CNT30366876Digitaria exilisSorghum bicolor32.5746.8891.37255forward
CNT30357736Digitaria exilisLactuca sativa29.3739.5280.43230forward
CNT30328520Digitaria exilisAsparagus officinalis7.1522.5887.556reverse complement
CNT30594952Digitaria exilisEragrostis curvula39.2158.3792.83307forward
CNT30558096Digitaria exilisPanicum hallii39.4638.292.23309forward
CNT30551540Digitaria exilisOryza brachyantha26.1825.2891.22205forward

Expression of CNT30497939

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MTRRGTSRGARCLPPRPGQGCTRRRGPGAPPHRRG*

>peptide 2 (38 aa)
QIASGSHCMQDEMHALYSYKTKYRMSLHGSMNNSTKHT*

>peptide 3 (59 aa)
MATVAAGAAGAARRDEKHAGARRDEKHAGARRLLLRAVAIDVFVCLVAASLALVVGDGG*

>peptide 4 (30 aa)
MPSSSAWSRMYTSSGTWSSTSPSGVMSLTL*

Sequence

>CNT30497939
ACCAAATAGCTAGCGGTAGCCACTGCATGCAAGACGAAATGCATGCATTATACTCATACAAAACAAAGTATAGGATGTCTCTCCATGGATCGATGAACAA
CTCAACGAAGCACACATAATTGCAAACAGAAGTAAGCTAATAGCACGACAGTAATAAAGCGATTAATAACCAAGAAAATCAACAACAGAAGCAAGCATAG
CATGGTGCAGACAGCATCACAGTAGCGGTGGATAGTTAGGCGGTGAGCTCCTCCTCCTTGTGCGTCTCGATGACGACGTCAGAGGTGGGGTAGGCGGCGC
AGGTGAGGACCCATCCGGCGGCGACCTGGTCGTCGTCGAGGAAGCTCTGGTCGGACTGGTCGACGCTGCCGGAGACGACCTTGCCGGCGCAGGAGGAGCA
TGACCCGGCGCGGCACGAGTAGGGGAGCTCGATGCCTTCCTCCTCGGCCTGGTCAAGGATGTACACGTCGTCGGGGACCTGGAGCTCCACCTCACCGTCG
GGGGTGATGAGCTTGACGTTGTAGGTGGCCTGCGCGCGCAGCCTGGCGAACCTGCCAGTGGTGACCGGCATGGCGACGGTGGCTGCTGGCGCCGCCGGAG
CAGCGCGGAGGGATGAGAAGCACGCCGGCGCGCGGAGGGATGAGAAGCACGCCGGCGCGCGGAGGCTGCTGCTGAGGGCGGTGGCCATTGATGTTTTTGT
TTGTTTGGTAGCAGCTAGCTTAGCTTTGGTAGTAGGTGATGGAGGGTAGTGGAAGCTTGCTGCTAGTGAGGATCGATCCAAGT