Detailed information on CNT30256898


BLAST search results

BLAST vs Swiss-Prot:
sp|P00228|FER_WHEAT, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695475Avena sativaOryza sativa22.5928.789.47190forward
CNT30676003Avena sativaSetaria viridis35.7942.1688.37301forward
CNT30523619Avena sativaSetaria italica35.7943.1989.04301forward
CNT30306166Avena sativaTriticum aestivum36.2762.591.8305forward
CNT30668240Avena sativaTriticum dicoccoides27.7139.1696.57233forward
CNT30467544Avena sativaSaccharum spontaneum36.1543.0687.5304forward
CNT3010873Avena sativaZea mays35.0839.688.81295forward
CNT30343858Avena sativaEragrostis tef36.0336.2987.79303forward
CNT30366876Avena sativaSorghum bicolor33.1751.2988.17279forward
CNT30370928Avena sativaOryza glumipatula27.9429.2388.94235forward
CNT30584932Avena sativaEchinochloa crusgalli36.7458.6389309forward
CNT30497939Avena sativaDigitaria exilis36.7439.4687.38309forward
CNT30117470Avena sativaOryza nivara24.9723.9790.48210forward
CNT30558096Avena sativaPanicum hallii36.2737.788.52305forward
CNT30551540Avena sativaOryza brachyantha21.0521.8290.96177forward

Expression of CNT30256898

Peptides detected in this lncRNA

>peptide 1 (82 aa)
GQQPNIHQIPTDNGVQPHLFLLLLGLRKQTILEIKHSKPNHKSTTSTNNCTNYSSVLWIPDTVHVSTRRRRKSIEMDNKLII*

>peptide 2 (35 aa)
MTAAARRGWRQAPRGRRGRGRRARGGWLPAPAWRR*

>peptide 3 (94 aa)
MPLAAVVDDDSGSATRVAAGAEGAAGQREKGARRLAPRTCLAAVRPRAAGARATRGAGGAAERREKGARRLLSAVAIVANYLSCWVCGVEDRWS*

>peptide 4 (50 aa)
MTRSDWGYAAQVSTHPPSTWSSSRKLWSDWSTVPETTLPAQEEQEPARQE*

Sequence

>CNT30256898
GGCCAACAGCCTAATATACACCAAATTCCAACAGATAATGGAGTACAACCTCATCTCTTTTTATTGCTACTTGGCTTGAGAAAACAAACAATACTCGAAA
TTAAGCATTCAAAACCCAACCACAAGTCCACAACAAGCACTAACAATTGTACTAATTACTCCTCGGTACTCTGGATTCCTGACACGGTTCATGTAAGCAC
GCGCAGGCGCCGGAAATCGATCGAAATGGATAATAAGTTAATAATTTAGGCGGTGAGCTCCTCCTCCTTGTGGGTCTCGATGACTAGGTCGGACTGGGGG
TACGCGGCGCAGGTGAGCACCCACCCGCCCTCCACCTGGTCGTCGTCGAGGAAGCTCTGGTCGGACTGGTCCACCGTGCCGGAGACCACCTTGCCGGCGC
AGGAGGAGCAGGAGCCGGCGCGGCAGGAGTAGGGCAGGTCGATGCCTTCCTCCTCGGCGTGGTCGAGGATGTAGACGTCGTCGGGGACCTCGAGGTCCAC
CTCCCCCTCCGGCGTGATCAGCTTCACCTTGTACGTCGCCTGCGCACGGAGCCTCATGCCCCTGGCGGCCGTCGTCGACGATGACAGCGGCAGCGCGACG
CGGGTGGCGGCAGGCGCCGAGGGGGCGGCGGGGCAGAGGGAGAAGGGCGCGCGGAGGCTGGCTCCCCGCACCTGCTTGGCGGCGGTGAGGCCGAGAGCCG
CCGGCGCGAGGGCCACGCGGGGCGCCGGTGGGGCGGCGGAGCGCAGGGAGAAGGGCGCGCGGAGGCTGCTCAGTGCGGTGGCCATTGTTGCTAACTACCT
GAGCTGCTGGGTGTGTGGTGTGGAGGATAGGTGGAGCTAGG