Detailed information on CNT30477520


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41951|TIP21_ARATH, E-value = 1e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375948Arabidopsis halleriArabidopsis thaliana86.638.6494.43323forward
CNT30704199Arabidopsis halleriPrunus avium31.98.0281.51119forward
CNT3057589Arabidopsis halleriAmborella trichopoda20.648.2484.4277forward
CNT3022241Arabidopsis halleriPopulus trichocarpa25.479.7686.3295forward
CNT30333449Arabidopsis halleriCynara cardunculus34.0521.1783.46127forward

Expression of CNT30477520

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MLAPIATATKRAKPWQTAMATSPGVSRAASDVSFAIYINAMAEPTPAKTKSRVEMNSAR*

>peptide 2 (82 aa)
CDLTTDSKTKSDGWIHMATGDVGSDCNRYEESKTMANSNGHQSRRIKSSVRRQLRYIHKCNGRANTSENKEQSGDELSEVSS*

Sequence

>CNT30477520
TGTGATTTGACCACCGACAGCAAGACCAAAAGTGACGGCTGGATTCACATGGCCACCGGAGATGTTGGCTCCGATTGCAACCGCTACGAAGAGAGCAAAA
CCATGGCAAACAGCAATGGCCACCAGTCCCGGCGTATCAAGAGCAGCGTCCGACGTCAGCTTCGCTATATACATAAATGCAATGGCAGAGCCAACACCAG
CGAAAACAAAGAGCAGAGTGGAGATGAACTCAGCGAGGTAAGCTCTTAGCGAAGCCAAGCTGAAGGAATCATCAAAAGAACCAAAGGCAACTCCAGCCAT
TGTAGTAATTGAAGAAGAAAGAAGAAGGAAATGTTTTGAAGGTTTTTTTGCTTAGTGAAGAAGATGATAAGAC