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Detailed information on CNT30333449


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41951|TIP21_ARATH, E-value = 1e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374836Cynara cardunculusArabidopsis thaliana21.1715.1481.1127forward
CNT30477520Cynara cardunculusArabidopsis halleri21.1734.0583.46127forward
CNT30356611Cynara cardunculusLactuca sativa12.1727.2487.6773forward
CNT3057589Cynara cardunculusAmborella trichopoda24.8315.9483.22149forward

Expression of CNT30333449

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLAAIETATKSAKPWQTATATRPGGSRAASAVNL

>peptide 2 (34 aa)
MYIYIYIYMVFTSPPVTKLRRKQATTEPRSWAIQ*

Sequence

>CNT30333449
GTCAACTATACAAAATTGTTTGGTAGTGTTTTATTGATATAGAAAGTAACTTATTCAGTAAGCTTCTATAGGAAACTTTATGCAGAAATCCAAATTTTTT
TCAAACATTTTCTTCCCAATTAATGGAAAACCAACATCTAAAATATACGGTTGGTAGGGTTAAGTTCACATGAGACAACATTTTTACACTTGAAATTTAA
CAGAAATATATTATGAAGGTAAGAAAAATCCGAACCTTCAAGGCAAAAATATTGTTTCTTTCACAATGTTTTACTGTGAAATTTCAAATGTAAAAAGGTG
ATATCATGAAAACAGAATAGACTGAGATCCCAAGTGTGTGTGTATGTATATATATATATATATATATATGGTGTTTACCAGTCCTCCGGTGACGAAGCTG
AGAAGGAAGCAAGCGACAACGGAGCCAAGAAGTTGGGCAATCCAGTAAAAGATACCAGTTAGGACGGTGACAGCTGGATTGACGTGGCCACCGGAGATGT
TGGCGGCGATAGAGACGGCTACGAAGAGTGCAAAGCCATGGCAAACAGCCACAGCCACCAGACCCGGTGGATCTAGGGCGGCGTCCGCCGTCAACTTGGC