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Detailed information on CNT3057589


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30477520Amborella trichopodaArabidopsis halleri8.2420.6484.4277forward
CNT30333449Amborella trichopodaCynara cardunculus15.9424.8383.22149forward

Expression of CNT3057589

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MATGDVCTHCNSNEECEAMAQGHGHQPRWI*

>peptide 2 (54 aa)
MPVKMVTAGLTWPPEMFAPTATATKSAKPWHRATATSPAGSRAALEVSLSAKIV*

>peptide 3 (44 aa)
FCLKLSFSPNIPSPYRVLFFYFFLVFSSIEKLILKLKLTKKLKQ*

>peptide 4 (48 aa)
FLSKIVIQPEYSFPISGFIFLFFFSFFINRETNIKIKTNEKTKTINKI*

Sequence

>CNT3057589
TTTTTTGTCTAAAATTGTCATTCAGCCCGAATATTCCTTCCCCATATCGGGTTTTATTTTTTTATTTTTTTTTAGTTTTTTCATCAATAGAGAAACTAAT
ATTAAAATTAAAACTAACGAAAAAACTAAAACAATAAATAAAATTTGATCCTCGGACCGAGAAACAATTTTGAAAAAAAAATATAAGTCAACCGACCTTC
CTATAAACATAATATTTTGTATTTAAAAAAAAATAAGGTCCATATGTAAAATCACTGTACTTGTTCTATACTAAAAAAAAATGGACTCAAGGCATTAGTG
GTTAGGGAAGTTGGTGCAACAATACGACGTACTGTTTTCCAACTTATATACCCCAAAACAAAAATATTTACTTTCTTTATATAAAAAAAAAAGTTTATAT
AACCAGTAATTTTAGCAAAGAAAGTACATACAATATTCATATGTTAGCACGACACGGATACAAGTTTCGAGATGTCTGATATCAAAACCGGTCATCTATA
TACTGCTCAAAGATAGGGGAGAGCTGGGATTTTAAGGGATGCTCAAAAATATATTTTTGAATAATGCCCATTATGCAGTCGGGTAGCAAACTCTTACCAA
GCCACCTGTGACGAACTTGAGCAAAAAGGAAGCAACAATGGCACCAACGAGTTGGGCAATCCAGTAAACGATGCCAGTCAAAATGGTGACAGCGGGATTG
ACATGGCCACCGGAGATGTTTGCACCCACTGCAACAGCAACGAAGAGTGCGAAGCCATGGCACAGGGCCACGGCCACCAGCCCCGCTGGATCTAGGGCCG
CGCTAGAGGTCAGCTTGTCTGCAAAAATTGTATGAGAGAGAGAGAGAGAGAAAGATAGATCAGGATATACTCAGTCTCTCTCTCTTACCAAAAATTTGGA
GAAAATGAAAAAGAAGAGAAGGAAAACAAACTGTA