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Detailed information on CNT30704199


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATL6|TIP41_MAIZE, E-value = 2e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317642Prunus aviumCorylus avellana5.5334.1790.2482forward
CNT30442853Prunus aviumAegilops tauschii9.0420.6882.84134forward
CNT30477520Prunus aviumArabidopsis halleri8.0231.981.51119forward
CNT3022241Prunus aviumPopulus trichocarpa13.6220.7687.13202forward

Expression of CNT30704199

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLLVNRSGIPSGLCINHKNYQHNFILYEEIPLNPPNKTF*

>peptide 2 (33 aa)
MSTCLHTKSKKKKKRLQNYQGLLVHDLNCFASN*

>peptide 3 (80 aa)
MPVRIVICPPRANPKVTAGFTCPPEMLEPIETATKRAKPWAIAMATSPAGSRAALDVNLSAHKKQKKKKKVTKLPRIISA*

>peptide 4 (52 aa)
MDKAVIPCTIRRVKEKIVLILDWHVEQYLTKPPVTNLRMKAATMAPRSWAIQ*

Sequence

>CNT30704199
GTCTGAACAGAAAAATTCCATAGTTAGTTTTAACACTTAATTAAACTAATAAATTAAGATTCCTTTGTTCATATATGCTAAATAATAACTATAATTAGTT
TAAAACACTTTTTCAATAATAGTGACGTCACAATTATCAAATTTGTTCACCGTAATAGATAAGATTTAATTTAAAAGGAACTCAAATAAGAATCAATCAA
ATGTTGTTAGTGAACAGATCTGGTATCCCTAGCGGTCTTTGCATAAATCACAAAAACTATCAACACAATTTTATTTTGTATGAAGAAATTCCACTAAATC
CCCCAAATAAAACCTTTTAATTTCATTCACGGATAAATAGATAGCCAAATTCTAATTGTTGTGCTAGCTAAGTTGATTAGGGTTAAGCCCTAAGTGACAT
AATTTGTCACTCCTAAAATTAAGAACACCAAAAATATCATAATTGCCCTTATTTTGTGCATGAGGGCTTAGGTTGGGATGGACAAAGCTGTCATTCCATG
CACTATTCGTCGAGTGAAGGAAAAAATTGTATTAATTTTGGATTGGCATGTTGAGCAATATCTTACCAAGCCTCCGGTGACGAACTTGAGGATGAAGGCA
GCAACAATGGCACCAAGAAGCTGGGCAATCCAGTAGAAGATGCCAGTGAGGATAGTGATTTGTCCACCGAGAGCCAATCCAAAGGTGACAGCTGGGTTCA
CATGTCCACCAGAGATGTTGGAGCCAATTGAGACTGCAACAAAGAGAGCAAAGCCATGGGCAATAGCAATGGCTACTAGCCCAGCAGGATCAAGAGCAGC
ATTGGATGTCAACTTGTCTGCACACAAAAAGCAAAAAAAAAAAAAAAAGGTTACAAAATTACCAAGGATTATTAGTGCATGATTTAAATTGCTTTGCAAG
TAATTAAATCTCAAATCATAAATTGTTATAGATTGTATCGTCGTCTTTCTGTCACGGGATCGAATTCATGACATAGTACCTCGCAAGTTGAACTATTATT
TTTAGTTTTAGTATATTGTTTTGATAGACCAAAAAAAGATAGAAATGAGTTGAATAGAAGAAATGATTACTGTAAGCAATGGCTGAACCAACTCCTGCAA
AAACAAAGAGCAAGGTTGAGATGAACTCTGCAAGATAGGCCTTAAAGGACCCCAAACTGAAAGAATCATCAAAGCGCCCAAATGCTATTTTGGCCATCTT
TCAAAAAACGACTTAATTGAAAAGAGTATGGAGAGCAGAAGATATGGGTTTAGAATTGGGAATGTTCAGATGGCAAACAAGTCCTAGCTAGGTCACATAT
ATATAGTAAGGATACTACTTGCCTCCTGTATACTCTTTTTTCCTTCGAATCACAGTTTCACACATATACAAAAATAATTCATCAAAAAAACAAAAAAGAA
AAATTTATACACACATATCACATTGCTATTGGCACGAAAGAACATATGAACTTCTACTTACTTGGAAACGAGGGAAGTATTTT