Detailed information on CNT30451624


BLAST search results

BLAST vs Swiss-Prot:
sp|O64477|Y2913_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672297Saccharum spontaneumSetaria viridis3.3148.9385.96114forward
CNT30439328Saccharum spontaneumAegilops tauschii4.6233.3386.16159reverse complement
CNT30243079Saccharum spontaneumAvena sativa16.1288.3883.06555forward
CNT30350637Saccharum spontaneumEragrostis tef12.285.7188.33420forward
CNT30362853Saccharum spontaneumSorghum bicolor12.0254.2691.3414forward

Expression of CNT30451624

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MHQQATLQALVSSSTFASSPFSLGSNKVRTSPS*

>peptide 2 (77 aa)
GGSSRQSHLRLASRRPDARTPCRPPACGVYASHGGRARSRCVRCAVLSLVPAHPSPLTCSNESVTASAAVLSITPLE*

>peptide 3 (80 aa)
MDELVASVRSRLPLSWRTAMVELELILMFVDHSSRFWDWRTRLPSLPMVKAAVVGSATGTSGLAIHTVVCSGMLLYHMAM*

>peptide 4 (37 aa)
MNSRKEKSEWCEARDLTARSFAANHSGLRHRVLLILC*

>peptide 5 (29 aa)
MITVLLFLESGSSEAASLRKSVPPPFPLY*

>peptide 6 (41 aa)
MEQAAGSHQWSCSAQASPQEARCLWDDRCFASKPWMNWWHL*

>peptide 7 (39 aa)
MPNKAATTVISICITRAIVQTSHLTVLRAHRHSSLSIIR*

>peptide 8 (47 aa)
MRSSRMARSDKPKEHVEYQCQGFGCLSLCNANAVICHVIAVSFIVVD*

>peptide 9 (41 aa)
MNSYTSSLRDPSEQNPRRRTKLTCCVVPMVLTSARNCFSPC*

>peptide 10 (56 aa)
MAVESGSFPLNTEPKAPPPSLSEKLLVTCCRSLYLKAIIVPPAVLDILRVLSRRYF*

>peptide 11 (51 aa)
MKYCVVPLGSNSSENGPGKGLAVLLHGTSRWLTPVVLFSPSFPPGSQVFVG*

>peptide 12 (59 aa)
MGARWSSQGWDSGERTLDFWSNWLRWLLDAEVLMDSKAPLHGLMTKGAVFDLVQWCYAF*

>peptide 13 (57 aa)
AGDHLARVISDSPPAGRTLEPHAVRRPAEFTPPTGDGRALGASDAPFSLSCLLTRRL*

>peptide 14 (74 aa)
MHYKSNCSDKPLDSLESSPPQQSEHYQVASHFPWHRTYQAEPVQSSNWSGTAVVLSFCTRHCNPGDPNHSEPSG*

>peptide 15 (61 aa)
RGIISPESSPTRLPPAGRSNPMPSAGLRSLRLPRGTGALSVRPMRRSLSRACSPVAFNLQQ*

>peptide 16 (30 aa)
MLCCANGAHLSTKLLLPLLNSIEPLHSNGC*

>peptide 17 (31 aa)
MPRKVRKPHTVSLAGTRTRSMTGRQPPMSAA*

>peptide 18 (30 aa)
MVSTAAQRRIWPSRSGRRKKTGAMDGSSVE*

>peptide 19 (30 aa)
MLQITIPKGDHCAPSSLGYPESPFSAVFLK*

Sequence

>CNT30451624
GCGGGGGATCATCTCGCCAGAGTCATCTCCGACTCGCCTCCCGCCGGCCGGACGCTCGAACCCCATGCCGTCCGCCGGCCTGCGGAGTTTACGCCTCCCA
CGGGGGACGGGCGCGCTCTCGGTGCGTCCGATGCGCCGTTCTCTCTCTCGTGCCTGCTCACCCGTCGCCTTTAACTTGCAGCAATGAGTCAGTGACTGCA
TCCGCCGCCGTCTTATCAATCACCCCGCTCGAGTAGTCGAGTTGGCTCCCTCCAATCCCAGACTTTGGAGATGTGAACTGCCTGAAGTAGCACTGCGCGT
CTGGGAAGTTGTCGTGCTGTTCTGTGTCTGGGAAGTCTGACTTGAAGATATATCTGAAAAGAAGTTTATAACATCAGGGCTTTCGCCAAGAACTTTCAAT
GACCTTGGAATAGGAGGCATGTTAACGTCAAGGAACCCCTCGAGGATTTGAACAATCTGACCAGTCGTAGGTCTAGCAGTTTCGTCATCTTGGATGCACC
AACAGGCAACCTTACAAGCTCTTGTGAGTTCATCAACATTTGCATCATCTCCATTCAGCTTGGGGTCCAACAAGGTCCGCACATCTCCTTCATGAAGCTT
GCTTGCAGCCAAGGTTGGGAAAAAGGTGGATCCATGCTGTTCTCCGTGACCAGCATTTCTCCTGCCTGATATGAGTTCGAAGAGCATCATGCCATAGCTA
AAGACATCTGCCTTTGCTGTTATTGCCACACCACTGATCCATTCAGGTGCAAGGTAACCCCTTGTTCCTCTCATTGTTGTCAATACACGGCTGAAGTCTC
TGCCTAAGAGCTTTGCTAGACCAAAATCAGCCACTTTAGGCACAAAGGACTCATCCAAGAGTATGTTTTCTGGCTTGACATCACAGTGTATAATGCAATC
CCTACATTTTTCATGCAGGTAATTTAAGCCCCTTGCTGTTCCAAGTGCTATTTGGTACCTGGTAGCCCAGCTCATTGTTGTTGTCTCACCAGAGAATAGC
TGCAGGTCCAGGGAGCCCTTTGGCATGAACTCATACACAAGCAGCCTCCGTGATCCTTCTGAGCAAAATCCAAGGAGGCGGACCAAATTAACATGCTGTG
TTGTGCCAATGGTGCTCACCTCAGCACGAAATTGCTTCTCCCCTTGCTGAACTCCATCGAGCCTCTTCACAGCAATGGCTGTTGAATCTGGGAGCTTCCC
TTTGAACACTGAGCCAAAGGCACCTCCACCCAGCCTCTCCGAGAAGTTGTTAGTGACATGCTGCAGATCACTATACCTAAAGGCGATCATTGTGCCCCCA
GCAGTCTTGGATATCCTGAGAGTCCTTTCTCGGCGGTATTTCTGAAATAGGAAGTATGACACAATAGAAAGGACTATTAAAACTGCAGCAACTCCACCAA
CAACTGCACCAATGATCACTGTCTTGCTCTTTTTGGAGTCTGGCAGCTCAGAAGCTGCAAGCCTGAGGAAGAGTGTGCCTCCTCCATTTCCGCTGTATTG
ATCCTGAAGGTTAATCAGATCCCCATGCCAAACAAAGCAGCCACTACTGTTATAAGTATATGCATTACAAGAGCAATTGTTCAGACAAGCCACTTGACAG
TCTTGAGAGCTCACCGCCACAGCAGTCTGAGCATTATCAGGTAGCCTCACATTTTCCATGGCATAGAACTTATCAGGCTGAGCCTGTGCAGAGCTCGAAT
TGGTCTGGCACTGCAGTGGTACTCTCCTTTTGCACCCGCCACTGTAATCCTGGAGATCCCAATCACTCTGAACCTTCTGGCTGAACCCCCTGATGCAGTT
GCAGAATGGCAGTGCATTGAGGTTGCAGCTACCATATGCCCCGCAAAGTGCGTAAACCTCACACTGTGTCCTTGGCTGGGACCAGAACAAGATCCATGAC
TGGGAGGCAGCCACCCATGTCAGCTGCTTGATCTGCCCATCCACATCGATGATGAACCTCGAGATGATGTTGTTGTCCTTCATTGAGTAGATGAAGTAGC
TCTCGGTCGCATTGTTGATGAACTGGAAGTTATAGTTGTAACCAGAGGTCATCTCTGGCACAAGGCTAAAGATGTTTCCATTCCAAGGACCACTTGTCCA
GTATGTTATGGAATCATTCCACTGAATGAAGTATTGCGTCGTGCCTCTTGGATCCAACTCCAGTGAGAACGGCCCGGGAAAGGGGTTGGCAGTGTTACTC
CATGGAACAAGCCGCTGGCTCACACCAGTGGTCTTGTTCAGCCCAAGCTTCCCCCCAGGAAGCCAGGTGTTTGTGGGATGATCGATGCTTCGCCAGTAAA
CCATGGATGAATTGGTGGCATCTGTGAGGTCGAGGCTACCGCTGTCCTGGAGGACAGCGATGGTGGAATTGGAGCTAATACTTATGTTCGTCGACCACAG
CAGCCGATTCTGGGATTGGAGGACGAGATTGCCGTCGCTGCCGATGGTCAAGGCGGCAGTGGTTGGGTCAGCCACCGGCACATCGGGGTTGGCCATCCAC
ACCGTCGTCTGCAGTGGTATGTTGCTGTACCATATGGCGATGTAGTAGTTGCTGGGATTGGAGGAGGTGGTGGTACCTTGGGGTGGGGTGTAGAAGCCCA
AGGTGAACTTGTTGCCCTTGGACACAATCTTCTGCGCGCCGGACAAGGGTGTGGAGGAGTTGATGGTGTCGACGGCTGCACAGAGAAGGATCTGGCCGAG
TAGGAGCGGTAGAAGGAAGAAGACAGGAGCCATGGATGGGAGCTCGGTGGAGTAGCCAGGGCTGGGACTCAGGGGAGAGGACTTTGGACTTCTGGAGTAA
TTGGTTGCGGTGGTTGTTGGATGCAGAGGTTTTGATGGACAGCAAGGCTCCACTTCATGGACTAATGACAAAAGGTGCCGTATTTGACCTGGTGCAGTGG
TGCTATGCTTTTTGACAGGTACACACCCAATGCCCTTCTGTTGTGGAAAGATCGATTAACATAATTCCAATCTCGCGCTGAAAATGATCAAAGATGAATT
CTAGGAAAGAAAAGAGCGAATGGTGTGAAGCCAGAGATTTAACGGCACGGTCGTTCGCGGCCAATCATTCAGGACTTCGTCATCGTGTCCTGCTAATACT
TTGCTAAGGTCAGGTGTTCACTGCTGATTATTCAATCTTTGATCTGGTCACCTCCTTACTGTTGAACAATCTTGGTGTAACGGTGTTCCTGCTTTCTCTG
ATGAGGTCTTCTAGAATGGCACGGTCGGACAAGCCCAAAGAACACGTTGAGTACCAGTGCCAGGGCTTTGGGTGCCTGTCTCTGTGCAATGCTAATGCTG
TCATTTGTCACGTGATAGCGGTGTCGTTCATTGTCGTCGATTAAGAGATGCTGTTTGTGAGACTGAGGCACTGACGAATGTGTTACGTTCTAGTTTCTGT
CCGTGGTCAGGCCTCTTTTGTCCTTCAACCGACGAGATATTTT