Detailed information on CNT30362853


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672297Sorghum bicolorSetaria viridis15.9952.3686.07122forward
CNT30451624Sorghum bicolorSaccharum spontaneum54.2612.0291.3414forward

Expression of CNT30362853

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLFDRKEFESEWCEAREEDVLLICCGWRVAEEPERRVDLD*

>peptide 2 (40 aa)
MRSSRMARSDEPKEHGEYRTTGTRALGACLCTMLMLSFVT*

>peptide 3 (39 aa)
GERSLDFWSKLVAVVVVGYRGFDGQQGSTSWTNDKRCRI*

>peptide 4 (63 aa)
MLFVRLRRRRMCYVLVFGRGLVSFALQPRRYLVVQEYMYRDEIISRAQRVWRLLTVWSQSSLIC

>peptide 5 (42 aa)
MDSKAPLHGLMTKGAVFDLVLCFLTGKNLRANGVKPEKRTCC*

Sequence

>CNT30362853
GGGGAGAGGAGTTTGGACTTCTGGAGTAAATTGGTTGCGGTGGTGGTAGTTGGATACAGAGGTTTTGATGGACAGCAAGGCTCCACTTCATGGACTAATG
ACAAAAGGTGCCGTATTTGACCTGGTGCTATGCTTTTTGACAGGAAAGAATTTGAGAGCGAATGGTGTGAAGCCAGAGAAGAGGACGTGTTGCTGATTTG
TTGCGGCTGGCGGGTGGCTGAAGAGCCAGAGCGCAGGGTTGACTTGGACTAGTTTAACGGCACGGTCGTTCGCGGCCAATCCTTCAGGACTTCGTCATCG
TGTCCTGCTAATACTTTGCTAGGTCAGGTGCTCACGGCTGATTAGTCAATATTTGATCTGGTCACCTCCTTACTGTTGAACAATCTTGGTGTAACTGTCT
TCCTGCTTTCTCTGATGAGGTCGTCTAGAATGGCACGGTCGGACGAGCCCAAAGAACACGGTGAGTACCGGACTACCGGTACCAGGGCTTTGGGTGCCTG
TCTCTGTACAATGCTAATGCTGTCATTTGTCACATGATACCGGTGTCGTGCATTGTCATCGATTAAAGAGATGCTGTTTGTGAGACTGAGGCGCCGACGA
ATGTGTTACGTTTTAGTTTTTGGCCGTGGTCTGGTCTCTTTTGCCCTTCAACCGAGGAGATATTTGGTGGTACAGGAATACATGTACAGAGATGAGATTA
TTTCGCGGGCCCAACGAGTTTGGCGATTATTGACAGTCTGGTCGCAATCCTCCTTAATTTGCC