Detailed information on CNT30243079


BLAST search results

BLAST vs Swiss-Prot:
sp|O64477|Y2913_ARATH, E-value = 2e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554278Avena sativaOryza glaberrima33.4444.6880210forward
CNT30451624Avena sativaSaccharum spontaneum88.3816.1283.06555forward
CNT30581183Avena sativaEchinochloa crusgalli82.4817.2883.01518forward
CNT30498486Avena sativaDigitaria exilis92.219.5880.66579forward

Expression of CNT30243079

Peptides detected in this lncRNA

>peptide 1 (87 aa)
CSNSTNNSTNDCCLALFTVWQLGCCKPEEECAYSISTVLVLEVHQVPMPDKAATGIISVSIACTVVQTSQLTLSRARSPSCSLGVIR*

>peptide 2 (38 aa)
MHSCSDKPAHTLQSSFPQLQSGRYQVASRLPLYKIYQA*

>peptide 3 (57 aa)
SAATPPTTPPMIAVLLFLRSGSSDAASLRKSVPTPSPLYWSWRFIRSPCQTKQPLEL*

Sequence

>CNT30243079
AGTGCAGCAACTCCACCAACAACTCCACCAATGATTGCTGTCTTGCTCTTTTTACGGTCTGGCAGCTCGGATGCTGCAAGCCTGAGGAAGAGTGTGCCTA
CTCCATCTCCACTGTATTGGTCTTGGAGGTTCATCAGGTCCCCATGCCAGACAAAGCAGCCACTGGAATTATAAGTGTAAGCATTGCATGCACAGTTGTT
CAGACAAGCCAGCTCACACTCTCCAGAGCTCGTTCCCCCAGCTGCAGTCTGGGCGTTATCAGGTAGCCTCACGCCTTCCATTGTATAAAATTTATCAGGC
TTAGTCTGTCCGGAGGTGGAGTTGGTCTGGCACTGCAACGGTACGTTCCTCTTGCACCCGCCACTGTGATCCTGAAGATCCCAATCACTCTGGACCTTCT
GGCTGTAACCCTTGATGCAGTTGCAGAAGGGAAGGGCATTGACGCTGCAGCTGCCATACGCCCCACAGAGCGCATACACGTCACACTGCGACAGTGGCTG
AGACCAGAACAAGATCCACTGCTGTGAAGAAGGAACCCATGTCAACTGCTTGATCTGTCCGTTGACGTCCATGATGAACCGGGAGAGGACTGCATCATCC
TTCATAGAGTAGATGAAGAAGCTTTCCG