Detailed information on CNT30350637


BLAST search results

BLAST vs Swiss-Prot:
sp|O64477|Y2913_ARATH, E-value = 6e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554296Eragrostis tefOryza glaberrima46.7341.4187.34229forward
CNT30451624Eragrostis tefSaccharum spontaneum85.7112.288.33420forward
CNT3012901Eragrostis tefZea mays27.1446.586.47133forward
CNT30106963Eragrostis tefOryza longistaminata31.0266.9686.84152forward
CNT30580708Eragrostis tefEchinochloa crusgalli77.7613.8190.29381forward
CNT30498486Eragrostis tefDigitaria exilis77.9612.9288.22382forward

Expression of CNT30350637

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MHQQATLQALVSSSALASPFSLGSNKLCTSPS*

Sequence

>CNT30350637
CCGCCATCCCTGGTCCCCACTCCCAGGACCATCTGAATTATATACTTTGAAGTTACGGTCCGCCTGACATAGAACTGTGCGTCTGAGAAGTTGTCGTGCT
GTTCTGCATCTGAGAAGCCTGACTTGAAGATATATCTGAGAAGAAGTTTATGGCATCTGGGCTTTCACCAAGAACTCGCAGTGCCCTTGGAACGGGAGGC
ATATTAACATCAAGGAATCCCTCAAGGATTTGAACAATCTGGCCAGTTGTGGGTCTAGCAGTTTCATCATCTTGGATGCACCAACAGGCAACCTTACAAG
CTCTTGTGAGTTCATCAGCACTTGCATCTCCATTCAGTCTGGGGTCCAACAAGCTCTGCACATCCCCTTCATGAAGTTTGCTTGCAGCCAAGGTCGGGAA
GAAGGAGGATTTGCCGTCTTCTCCGTGATCAGCATTTCTCCTGCCTGATATGAGTTCGAAGAGCATCATGCCATAACTGAAGACATCTGC