Detailed information on CNT30439328


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30451624Aegilops tauschiiSaccharum spontaneum33.334.6286.16159reverse complement
CNT30580708Aegilops tauschiiEchinochloa crusgalli32.085.5585.62153reverse complement
CNT30498486Aegilops tauschiiDigitaria exilis30.614.9485.62146reverse complement

Expression of CNT30439328

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MKPTNPVIEMDTISPCGRTMYQLPTKPNI

>peptide 2 (31 aa)
MNCIDKLTVKWINAMGEKEKSLSSLLEHSLT*

>peptide 3 (33 aa)
MICSMPPATSQRSRGEVPSAQCSRGSSQIQHPW*

>peptide 4 (44 aa)
MLAKVVKRLHLTIKDHETYQSSDRDGHNLSLWKNNVSIANKTKHF

Sequence

>CNT30439328
CGCTCATGAGCCGAGTGGTTGTGGTTAGCTCGGGAAGAGACACCAGCACAAATGAACTGCATTGATAAGCTCACAGTCAAATGGATTAATGCAATGGGTG
AGAAGGAGAAGTCATTGTCTTCTTTGTTGGAACATTCCCTAACATGATCCAAGAAATTTCACCGAGATAGGACTCTTCGGATATCAAAGACTGCTGGGGG
CACGTTGATTGCCTTCAGGTACAATGATTTGCAGCATGCCACCAGCAACTTCTCAGAGAAGCCGGGGGGAGGTGCCTTCGGCTCAATGTTCAAGGGGAAG
CTCCCAGATTCAACATCCATGGTGAAATAAATAGGAGAATACATGCTTGCAAAAGTTGTCAAGAGGCTCCATTTAACCATCAAAGACCATGAAACCTACC
AATCCAGTGATAGAGATGGACACAATCTCTCCTTGTGGAAGAACAATGTATCAATTGCCAACAAAACCAAACATTTC