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Detailed information on CNT30451061


BLAST search results

BLAST vs Swiss-Prot:
sp|P35793|PR13_HORVU, E-value = 3e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690438Saccharum spontaneumOryza sativa14.6440.1787.41143forward
CNT30671790Saccharum spontaneumSetaria viridis9.4241.0791.392forward
CNT30308186Saccharum spontaneumTriticum aestivum1326.3587.4127forward
CNT30226328Saccharum spontaneumHordeum vulgare9.6221.3288.394forward
CNT30345634Saccharum spontaneumEragrostis tef13.3130.2390130forward

Expression of CNT30451061

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MHGLWRVTRYFYSGNRMETIGDLSKIPTILT

>peptide 2 (41 aa)
EGIPCTPDGGNSRVLAILVMIILIIYFYLFYETRYKLSHPT*

Sequence

>CNT30451061
TGAGGGCATCCCATGCACGCCAGACGGTGGGAATTCAAGAGTGCTAGCTATCTTGGTCATGATCATTCTTATTATTTATTTTTATTTATTTTATGAAACA
CGATACAAACTGTCACACCCCACATAGAGAACATACATGTATGCACACTTCACTTAAACCTAGGTGAGTAGGTTCACAAGAAACCTAATCAACTGGTGGG
CTAAGCTTAGTTTGCGGCTTATTCAAATCGATCCGGTAGCATGTACACAATATATATATCCATCTGGACATGCATGTACGTAGTACGTATGTATGCGCAC
AATCGATTGGAACTAGCTAGCTAGGCAGTAGCTAGTAGGGTTTCTCCCCGGCGTAGTTGCCCGGCGGGTTGTAGTTGCAAGTGATGAAGACGCCACCGCC
GTTGTTGCAGACGACGCGGGCGCAGCCGATGGCGGTGGATTTGCGCCACACAACCTGCGTGTAGTGGCCGCACACCTTCCCCGCCGCGCAGCTGTTGCTG
TTGTAGTTGTAGTTCGGCTTCTCCCCCACCCACGCGCCGACGGCGTCCGACGCCGTCCAGTCTTTGCCGGAGCTGCCCCAGAAGAGGTTTTCACCGTAGC
GGTTGGGCCCGCCGCCGGAGTGCACGAGCTTGCAGTCGCCCTGGCGCTGCGCCGCGTAGCTCCGCGCGAAGGCGGCCACGTTCTCGTCCCACGACACCGG
GCCGACGCCCACGGCCGCGCGCGCCGCGTTGTGCGGGTTCACGAAGTCCTGCGCCGAGTTCCGGGCCGCGCATGGCGTGACGGCGGCCACGGCCGACGCC
ATGGCCAAGGCCACAGCTAGACACATAGACGAGTACTCCATTGCTAGAGAACTGGATAAAAATAAAGTTTTTGTGTGAGATGGATGCATGGGTTGTGGCG
AGTGACCAGGTATTTTTATAGTGGTAATAGGATGGAGACCATTGGCGACTTGTCAAAGATACCTACTATTCTCACTC