Detailed information on CNT30308186


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690438Triticum aestivumOryza sativa29.6740.1792.31143forward
CNT30226243Triticum aestivumHordeum vulgare5072.3794.19241forward
CNT30451061Triticum aestivumSaccharum spontaneum26.351387.4127forward
CNT30596584Triticum aestivumOryza meridionalis21.3717.9487.38103forward

Expression of CNT30308186

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MYVCMYVLRRRASQLVWFLSNDIPAGLVVAGDEDAEVIVADDAGAADAG*

>peptide 2 (59 aa)
ITVQDGIHGLLRHSFYLLARSLWLVRHTKVHAIRDERLDVCMHVCTAKTCITVSMVSVQ*

>peptide 3 (35 aa)
MAADMARASKMASLGVCILVSRCLNDLSVPALASFA

Sequence

>CNT30308186
ATTACAGTCCAGGATGGAATACATGGCTTATTACGGCATTCCTTTTATTTACTCGCTCGGTCCCTCTGGCTAGTTAGGCATACGAAGGTGCATGCGATTA
GGGACGAAAGACTAGATGTATGTATGCATGTATGTACTGCGAAGACGTGCATCACAGTTAGTATGGTTTCTGTCCAATGATATTCCCGCGGGGCTCGTAG
TTGCAGGTGATGAAGACGCCGAGGTTATTGTTGCAGACGACGCGGGCGCAGCCGATGCTGGTTGACGCGCGCCACACCACCTGCGTGTAGTGCCCGCACA
CCTTCCCCGCCGCGCAGGTGTTGGAGCCGTAGTCGTAGTCCTGAGGCGAGTTCTGCGCCTGGGAAAGATTAGCCATGGCGGCTGACATGGCTAGGGCGAG
CAAGATGGCTAGCTTGGGCGTCTGCATTCTCGTTTCGCGGTGTCTAAATGATTTATCTGTGCCTGCACTAGCTAGCTTTGCT