Detailed information on CNT30345634


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690438Eragrostis tefOryza sativa32.3339.0484.89139forward
CNT30671790Eragrostis tefSetaria viridis21.6341.5288.1793forward
CNT30399969Eragrostis tefTriticum turgidum25.5819.4383.64110reverse complement
CNT30589867Eragrostis tefMusa acuminata26.9819.8385.34116forward
CNT30451061Eragrostis tefSaccharum spontaneum30.2313.3190130forward

Expression of CNT30345634

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MCPCSSHSEMTIYSLRYYSYFQNVTCIKVMLVHVPCMQMHTYVYMFSQLFN*

>peptide 2 (47 aa)
MFITFRDDNLFSEVLFLFPERYMHQGDAGACTMHADAYVRIYVLSII*

>peptide 3 (83 aa)
MYHACRCIRTYICSLNYLIRSWNLIGRPSLIDLVRGLSDEVARRVVAADDEDATVAADDAAAPDGGGLAPHHLRVVAARLPRWR

Sequence

>CNT30345634
GACCAGATAAAAGATGAAGGATGATCAGATCATATAAGAACAGAAATATGTATCATAAATGACATCATTTTATTGGTGTCTATGTGTCCATGTTCATCAC
ATTCAGAGATGACAATTTATTCTCTGAGGTACTATTCTTATTTCCAGAACGTTACATGCATCAAGGTGATGCTGGTGCATGTACCATGCATGCAGATGCA
TACGTACGTATATATGTTCTCTCAATTATTTAATTAGAAGTTGGAACTTAATTGGAAGGCCCTCGTTGATTGATCTAGTACGGGGACTGTCCGACGAAGT
TGCCCGGCGGGTTGTAGCTGCAGATGATGAAGACGCCACCGTTGCTGCAGACGACGCGGCCGCACCCGATGGCGGTGGACTTGCGCCACACCACCTGCGT
GTAGTGGCCGCACGACTTCCCCGCTGGCGC