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Detailed information on CNT30445863


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8LF20|CAP2_ARATH, E-value = 2e-120

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692389Saccharum spontaneumOryza sativa37.4853.6288.21407forward
CNT30678746Saccharum spontaneumSetaria viridis14.4646.7394.9157forward
CNT30136720Saccharum spontaneumLolium perenne19.5235.5784.91212forward
CNT30653707Saccharum spontaneumRosa chinensis12.8923.0381.43140forward
CNT30100729Saccharum spontaneumOryza rufipogon49.7241.5486.85540forward
CNT30575633Saccharum spontaneumOryza barthii39.4150.1290.19428forward
CNT30117787Saccharum spontaneumOryza nivara32.8737.1589.36357forward

Expression of CNT30445863

Peptides detected in this lncRNA

>peptide 1 (54 aa)
SAHRTVVGRQGTLQRGHHQQPALNHPVQAEQASESSVQEQAGRHCWHSRCSPVN*

>peptide 2 (41 aa)
MPKSPRCHHLMGKPPMTHCFHQQRVAPGRELEQAYYLAHLH*

>peptide 3 (92 aa)
MTQKPSRTRHTPCQRTCPAAPPAPRRYRRRAGSSLSQSDTAQPAPSCSALHHQWGGKQGTCQAAAVDGAYEQGPALASYPSLESAASCHHCSR

>peptide 4 (32 aa)
MLFISGSGSSLTGSGSGSGSRGGLLASLPGPS*

Sequence

>CNT30445863
CATCTGCACATAGGACGGTGGTGGGACGGCAAGGGACGCTGCAAAGGGGTCACCACCAACAGCCTGCATTGAACCATCCGGTGCAGGCAGAGCAAGCATC
TGAGTCTTCTGTCCAGGAGCAGGCAGGGCGACACTGCTGGCACTCCCGGTGCTCACCTGTGAACTGACATGCTGGCGCACAACACCCTGGTCATACATAC
CATTCAGCAGCAGCGGGTCCATACCACCTGACATTGCTGGCTTCTGCTTGGACAAGTTGCTTGCTGTCTCTACAAGGGCAAGCTCCCAATCAGCCTTCCC
AGGTTCAGCTGCAGGATTCTGCCATGCCGAAGTCACCTCGTTGCCACCATTTGATGGGAAAGCCTCCCATGACCCATTGCTTCCACCAGCAGCGGGTGGC
CCCTGGAAGAGAGCTAGAGCAAGCCTATTACCTTGCTCATCTGCACTAACAGTATCTTCTCTAAGATCCACCAAGTCACCCTGTGGCTGCGGGGGTGGCT
CTGGCTTCACCTCTTCCTCCACCTTCTCAGGTTCAGGCTCCTTATAATCTTCCGGTGCTGGAAGTGCCTTGATGCTGTTCATATCCGGCTCAGGTTCTTC
CTTGACAGGCTCAGGCTCAGGCTCAGGCTCCCGTGGTGGGCTCTTGGCCTCTTTGCCCGGTCCCTCATAAATTCTTCTAGCGTCTCCAGCAACTTATCAG
TGACACGCTGCACCTCTGGGTACTCAGATGACCTTGCAACTCCGGTATCTTTACACCATGAATAGAATGCACAGAGCTCATCAATCTGCTTTGCAGCGCT
AGCATATGACTCAAAAGCCTTCACGCACTCGGCATACTCCATGTCAAAGAACCTGTCCAGCAGCACCGCCAGCACCTCGCAGATATCGGCGTAGAGCTGG
AAGCTCTCTCTCACAATCTGATACAGCGCAACCAGCACCATCCTGCTCTGCTTTGCACCACCAGTGGGGCGGCAAGCAAGGAACCTGTCAAGCAGCTGCT
GTAGATGGTGCATACGAGCAAGGACCCGCTCTGGCTTCATATCCCTCACTGGAGTCGGCGGCCTCTTGTCATCATTGTTCCCGCCA