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Detailed information on CNT30100729


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8LF20|CAP2_ARATH, E-value = 1e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692389Oryza rufipogonOryza sativa50.3186.17100654forward
CNT30678746Oryza rufipogonSetaria viridis11.5444.6491.33150forward
CNT30445863Oryza rufipogonSaccharum spontaneum41.5449.7286.85540forward
CNT3067070Oryza rufipogonLeersia perrieri33.0894.5191.63430forward
CNT30653707Oryza rufipogonRosa chinensis9.9221.2284.5129forward
CNT30369835Oryza rufipogonOryza glumipatula40.92102.3197.37532forward
CNT30575633Oryza rufipogonOryza barthii29.1544.38100379forward
CNT30117787Oryza rufipogonOryza nivara19.8526.85100258forward

Expression of CNT30100729

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MDPYHLSLWPSAWTDCSLSPQGQVPSQPSQAQLQDSAMQKSPHCHHLRGRPPMSHCFHQLQVALGRGPEQAGYLAHLQSQFLL*

>peptide 2 (33 aa)
MHKARQSALRRWHMPQMPSRTRHTPCQRTYPAAL

Sequence

>CNT30100729
CAAAGGCGATCTAGATCTGCAAATTCGGAGCATTAGCAGGTAAGATTATAAGATGTGACATGCTGTACCACTGTCAGTTATACCAATAACAACAACAGTG
AGAAAGAACAAGAACATAAGATTATGTAATCAACTATAGCCACCCTTAGATGCCGCAATTGGTTCCAAACAAATAGAATTACATATAAGAGACCAAAAGG
TTTGATCCAGAGGCAGGGGAACAACAACTGATACTGGACACAACCCCAAGGCTATGAGATCACGATACAGAACAAAATTCACAGCAACTGTAAGGATGAA
CAAAGAATAACTCAGTAAGTGGGGTAGTAGTACCCAGTATTTGCAGTGTAAGCCATTGGCATCCCATAAGGCATGGCTGGGTTGGGGGCGAAGCCATTGT
TGTAAGCCCGATCGAGCTTGGCCAAGCTTGACTGGCCCTGCATGCCATCCCTCTGGTACTGCTGCCACATCATCTGTTCCTGAGTCAAGAACTGCTGCTT
CTTCTCCATCTCCGCCATCTGAACATAGGACGGTGGTGGGAAGCTAAGGGACGCCGCAAACGGGTCTCCACCAACATTCTGCATTGAACCATCTGGTGCT
GGCAGAGCCAGCACTTGTGTTTTCTGTCCAGCCGGAGGTAGAGCAACGCTGCTGGCACTCCCAGTTGTCACTTGTGCATTGACATGCTGGCGCACGGCAC
CCTGATCATACATACCATTCAGTAGCAATGGATCCATACCACCTGTCATTGTGGCCTTCTGCTTGGACAGATTGCTCGCTGTCTCCACAAGGGCAAGTTC
CCAGTCAGCCTTCCCAGGCTCAGCTGCAGGATTCTGCCATGCAGAAGTCACCTCATTGCCACCATTTGAGGGGAAGGCCTCCCATGAGCCATTGCTTCCA
CCAGCTGCAGGTGGCCCTTGGAAGAGGGCCAGAGCAAGCCGGTTACCTTGCTCATCTGCAGTCACAGTTTCTTCTCTAAGATCCACTAAATCACCCTGGG
GTTGCGGTGGGGGCTCTGGCTTTACTTCCTCCTCCACCTTCTCAGGTTCAGGCTCAGGCTCCCGAGGTGGGCTCTTGGGCCGCTTTGCTCGGTCCCTCAT
AAATTCCTCCAATGTCTCCAGCAACTTATCGGTAACACGCTGCACCTCTGGGTACTCTGATGACCTAGCGACCCCAGTTTCCTTACACCAGCCATAGAAT
GCACAAAGCTCGTCAATCTGCTTTGCGGCGCTGGCATATGCCTCAAATGCCTTCACGCACTCGGCATACTCCATGTCAAAGAACCTATCCAGCAGCACTG