CANTATAdb - search

Detailed information on CNT30575633

BLAST search results

BLAST vs Swiss-Prot:
sp|Q8LF20|CAP2_ARATH, E-value = 6e-124

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692320	Oryza barthii	Oryza sativa	79.51	100.89	99.12	679	forward
CNT30678746	Oryza barthii	Setaria viridis	17.56	44.64	91.33	150	forward
CNT30445863	Oryza barthii	Saccharum spontaneum	50.12	39.41	90.19	428	forward
CNT30136720	Oryza barthii	Lolium perenne	24.47	35.07	85.17	209	forward
CNT30653707	Oryza barthii	Rosa chinensis	15.11	21.22	84.5	129	forward
CNT30100729	Oryza barthii	Oryza rufipogon	44.38	29.15	100	379	forward
CNT30117876	Oryza barthii	Oryza nivara	44.96	101.59	98.18	384	forward

Expression of CNT30575633

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MDPYHLSLWPSAWTDCSLSPQGQVPSQPSQAQLQDSAMQKSPHCHHLRGRPPMSHCFHQLQVALGRGPEQAGYLAHLQSQFLL*

>peptide 2 (90 aa)
MHKARQSALRRWHMPQMPSRTRHTPCQRTYPAALRAPHIYQHRAGSSLSQSDTARPAPSCCAWHHLWGGKQGTCRAAVAGGAYGQGPALAS

Sequence

>CNT30575633
CATTGACATGCTGGCGCACGGCACCCTGATCATACATACCATTCAGTAGCAATGGATCCATACCACCTGTCATTGTGGCCTTCTGCTTGGACAGATTGCT
CGCTGTCTCCACAAGGGCAAGTTCCCAGTCAGCCTTCCCAGGCTCAGCTGCAGGATTCTGCCATGCAGAAGTCACCTCATTGCCACCATTTGAGGGGAAG
GCCTCCCATGAGCCATTGCTTCCACCAGCTGCAGGTGGCCCTTGGAAGAGGGCCAGAGCAAGCCGGTTACCTTGCTCATCTGCAGTCACAGTTTCTTCTC
TAAGATCCACTAAATCACCCTGGGGTTGCGGTGGGGGCTCTGGCTTTACTTCCTCCTCCACCTTCTCAGGTTCAGGCTCCTTGTAGTCTTCTGGTGCTGG
CAGTGCCTTGATTTCATTCATATCTGGCTCAGGCTCAGGCTCCCGAGGTGGGCTCTTGGGCCGCTTTGCTCGGTCCCTCATAAATTCCTCCAATGTCTCC
AGCAACTTATCGGTAACACGCTGCACCTCTGGGTACTCTGATGACCTAGCGACCCCAGTTTCCTTACACCAGCCATAGAATGCACAAAGCTCGTCAATCT
GCTTTGCGGCGCTGGCATATGCCTCAAATGCCTTCACGCACTCGGCATACTCCATGTCAAAGAACCTATCCAGCAGCACTGCGAGCACCTCACATATATC
AGCATAGAGCTGGAAGCTCTCTCTCACAATCTGATACAGCGCGACCAGCACCATCCTGCTGTGCTTGGCACCACCTGTGGGGCGGCAAGCAAGGAACCTG
TCGAGCAGCTGTTGCAGGTGGTGCATACGGGCAAGGACCCGCTCTGGCTTCATG