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Detailed information on CNT30395723


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 4e-174

BLAST vs NONCODE:
NONMTRT001605, E-value = 1e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189758Triticum turgidumSecale cereale97.8683.8694.12868forward
CNT30225559Triticum turgidumHordeum vulgare10079.5593.91887forward
CNT30441267Triticum turgidumAegilops tauschii73.1788.7893.68649forward
CNT30666302Triticum turgidumTriticum dicoccoides58.8599.8196.17522forward
CNT30139374Triticum turgidumLolium perenne90.391.3387.14801forward

Expression of CNT30395723

Peptides detected in this lncRNA

>peptide 1 (51 aa)
WRAQSQDTLLAGDKVGGKCPCIVVDGVGDVVSEVLEWALARDDSLDKEAKH*

>peptide 2 (85 aa)
GEHSLKTPYLPGTKLVANAHALLLTGSAMWSARFSSGPLPVTIAWTKKPNIENMARRPFLISFTLSSANASGSSANPRGSKLPPG*

>peptide 3 (38 aa)
MPQGRQPTQEGRSCRLGRVGRRSHSVGHRQRGTPRRHP*

>peptide 4 (29 aa)
MAQRQWITSSSRFLAKVSGSAESPAVSHP*

Sequence

>CNT30395723
ATGGCGAGCACAGTCTCAAGACACCTTACTTGCCGGGGACAAAGTTGGTGGCAAATGCCCATGCATTGTTGTTGACGGGGTCGGCGATGTGGTCAGCGAG
GTTCTCGAGTGGGCCCTTGCCCGTGACGATAGCTTGGACAAAGAAGCCAAACATTGAGAACATGGCAAGGCGACCGTTCTTGATCTCCTTCACCTTGAGC
TCGGCGAATGCCTCAGGGTCGTCAGCCAACCCAAGAGGGTCGAAGCTGCCGCCTGGGTAGAGTGGGTCGACGATCTCACTCAGTGGGCCACCGGCAACGC
GGTACCCCTCGACGGCACCCATGAGCACGACCTGGCATGCCCAAATAGCAAGGATGCTTTGTGCGTGGACGAGGCTGGGGTTGCCGAGGTAATCGAGACC
ACCCTCACTAAAGATTTGAGAGCCGGCCTTGAACCAAACAGCCTCACCGAAGTTGACGCCGTTGTGGGCGAGCAACTCAGGGAAGACACAACCAAGTGCC
CCGAGCATGGCCCAGCGGCAATGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCAGCTGAAAGTCCGGCAGTGTCCCACCCATAGTCGC
CTGGGAACTCACCAGTGAGGTAGCTCGGGGGCTCACCAGAGAGTGGGCCGAGGTAGAGCACACGGTCGGCACCGTACCATGGGCTGCCAGAGGAAACCTG
CTTCACCTTCGCTGCAGTCTTGCGCATTGTGACTCGGGCCTCTCCAAAGAGAGCCAAAGATGGTACATTCTTCACCGCCTTGCCGGCAAAGGTCGAGGAG
GAGAGGGACATGGTGGCTGCCGCCATTGGAAAGCTAAGAAAAGTGTCCGCTGTGCTGTATGGGTTCTCTAAGAGATGAGTGAGTGTG