Detailed information on CNT30225559


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 1e-175

BLAST vs NONCODE:
NONBNAT007398, E-value = 2e-54

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189796Hordeum vulgareSecale cereale90.8591.5191.611013forward
CNT30284133Hordeum vulgareTriticum aestivum70.7656.7687.45789forward
CNT30395723Hordeum vulgareTriticum turgidum79.5510093.91887forward
CNT30253210Hordeum vulgareAvena sativa64.8462.0188.52723forward
CNT30686878Hordeum vulgareTriticum urartu81.2699.5693.82906forward

Expression of CNT30225559

Peptides detected in this lncRNA

>peptide 1 (35 aa)
RRDMEVDKSNHYFAQNSRNLHHGSTTQTTRKHASW*

>peptide 2 (32 aa)
MARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 3 (31 aa)
MRYPSTAPMSTTWHAQIARILCAWTRLGLPR*

>peptide 4 (29 aa)
MAHRQWITSSSRFLAKVSGSAESPAVSHP*

>peptide 5 (38 aa)
MPQGLQPGQEGRSCHLGRVGRRSHRVGRLQCGTPRRHP*

>peptide 6 (71 aa)
MVTRASPKRAKDGTFLTALPAKVEEERDMVAAAIGKLRKVSAVWVLKEMSECGDDLREEGGGDYLRQQEVS*

>peptide 7 (81 aa)
GATWKWTNQTIILHKTLVIYIMVVQLRPQENTPHGEHSPKTPYLPGTKLVAKAHALLLTGSAMWSARLSSGPFPVTIAWTK*

Sequence

>CNT30225559
AGGCGCGACATGGAAGTGGACAAATCAAACCATTATTTTGCACAAAACTCTCGTAATTTACATCATGGTAGTACAACTCAGACCACAAGAAAACACGCCT
CATGGTGAGCACAGTCCCAAGACACCTTACTTGCCGGGGACAAAGTTGGTGGCGAAGGCCCATGCATTGTTGTTGACGGGGTCGGCGATGTGGTCAGCGA
GGTTGTCGAGTGGGCCCTTTCCAGTGACGATAGCTTGGACAAAGTAGCCAAACATTGAGAACATGGCGAGGCGACCATTCTTGATCTCCTTCACCTTGAG
CTCGGCGAATGCCTCAGGGTCTTCAGCCAGGCCAAGAGGGTCGAAGCTGCCACCTGGGTAGAGTGGGTCGACGATCTCACCGAGTGGGCCGCCTGCAATG
CGGTACCCCTCGACGGCACCCATGAGCACCACCTGGCATGCCCAAATAGCTAGGATACTTTGTGCGTGGACGAGGCTTGGGTTGCCAAGGTAGTCGAGAC
CACCCTCACTAAAGATCTGGGAACCGGCCTTGAACCAAACAGCCTCACCGAACTTGACGCCGTTGCGAGCGAGCAACTCAGGAAAGACACAACCAAGTGC
TCCGAGCATGGCCCATCGACAATGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCAGGGTCAGCTGAAAGTCCGGCAGTGTCCCACCCATAGTCG
CCTGGGAACTCACCGGTGAGGTAGCTCGGGGGCTCACCGGAGAGTGGGCCGAGGTAGAGCACACGGTCAGCACCGTACCATGGGCTGCCGGAGGAAACCT
GCTTCGCCTTTGCTGCGGTCTTGCGCATGGTGACTCGGGCCTCCCCAAAGAGAGCCAAAGATGGTACGTTCTTGACCGCCTTGCCGGCAAAGGTCGAGGA
GGAGAGGGACATGGTGGCTGCCGCCATTGGAAAGCTAAGAAAAGTGTCCGCTGTATGGGTTCTCAAGGAGATGAGTGAGTGTGGAGATGATTTGAGAGAA
GAGGGGGGAGGTGACTACTTAAGGCAGCAGGAGGTGTCATAGGGAATCCATTTGGTGTGTAATCTGACAAGATAACCAAGGATAGAGAGAAAAATCTTGA
GCTTTGCTCCCATTG