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Detailed information on CNT30186648


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 4e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30297959Secale cerealeTriticum aestivum86.19100.7895.17518forward
CNT30394912Secale cerealeTriticum turgidum93.3463.195.9561forward

Expression of CNT30186648

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVQINTQSTCSYTLIHDVQVHMHISSDGRTDGWLNSKHI*

Sequence

>CNT30186648
TACGCCATGCATGCCAGTTGATGATCTTGAGTAATGTACTAAATGACACACGATTCTTCCATCCATTTGCTCGTGCACCTCGTGCTTAATTAATTTACAT
TGCGCACAGCCAGCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTAC
ACATGCATATCTCGTCCGATGGACGGACGGACGGATGGCTAAACAGTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTT
GTTGACTGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACGGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGG
CCAAGCGGGTCGAAGGCGCCGCCCGGGTAGATGATGTCGAGGCCCTCACCGAGGGGGCCGCCGCCAACGCGGTAGCCCTCGATGAAGCCCATGAGCACCA
CCTGAACCGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTT
G