Detailed information on CNT30721839


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-102

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-83

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30191096Triticum speltaSecale cereale66.3748.493.61454forward
CNT30298263Triticum speltaTriticum aestivum99.7190.3399.12682forward
CNT30393934Triticum speltaTriticum turgidum66.3799.7897.8454forward
CNT30141371Triticum speltaLolium perenne68.7156.3594.68470forward
CNT30684892Triticum speltaTriticum urartu10089.5398.98684forward
CNT30576670Triticum speltaOryza barthii71.0558.0690.95486forward

Expression of CNT30721839

SRR9114152: 15.85 RPKM

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MARHLLATTEAEHQVKGGLLLDVVVRQSAAILELLTSKDEALLVWWDTLLVLDLRLHIVDGV*

>peptide 2 (43 aa)
MRRCWSGGMPSLSWIFALTLSIVSEDSTSRVMVLPVRVFTKICI

>peptide 3 (61 aa)
KQAQVQGSFIHSSSSKSAAAQHKVQTQPDITLDHNTVATKNKTRRGHADNHNGVHRKTTDS*

>peptide 4 (61 aa)
MRRCWSGGIPSLSWIFAFTLSMVSEDSTSSVMVLPVRVFTKICIPPLRRSTRWRVDSFWML*

>peptide 5 (29 aa)
NRHKFRAHLFIQVHPNLLQHSIKFRHSQI*

Sequence

>CNT30721839
AAACAGGCACAAGTTCAGGGCTCATTTATTCATTCAAGTTCATCCAAATCTGCTGCAGCACAGCATAAAGTTCAGACACAGCCAGATATAACGCTAGACC
ACAACACGGTAGCAACAAAGAACAAGACCAGACGAGGACACGCTGACAATCACAACGGAGTACACAGAAAGACAACCGACTCGTGAGCCCAGAGACATAA
GCAGCTCCATGGCCAGGCACTTACTGGCCACCACGGAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGGCCAT
CCTCGAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAAGA
CTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATACCACCCCTGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGG
ATGTTGTAGTCAGCAAGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCG
CCTTGACGTTGTCGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCT