CANTATAdb - search

Detailed information on CNT30539020

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LYR2|UCRI2_ARATH, E-value = 3e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30378461	Brassica napus	Arabidopsis thaliana	75.54	31.87	89.07	494	forward
CNT30260049	Brassica napus	Brassica rapa	73.85	57.64	99.38	483	forward

Expression of CNT30539020

Peptides detected in this lncRNA

>peptide 1 (91 aa)
TPTTTNHSGFLTLTESSCGSLKDPRSTLLASLMSSSVLLLMNTGFPRHFTVTVVPGSMLPRSTSRDASARTSLLADMLTMSFRTRRRRTEA*

Sequence

>CNT30539020
GACTCCAACCACCACTAACCATTCCGGATTCTTGACTCTAACCGAGTCCTCTTGCGGGTCCCTCAAAGATCCAAGATCCACGCTGTTAGCCAGCTTGATG
TCGTCCTCTGTTCTTCTCCTGATGAACACTGGCTTTCCACGCCACTTCACTGTCACAGTAGTTCCAGGCTCGATGCTACCGAGGTCGACCTCGAGGGATG
CAAGTGCAAGGACATCTTTACTCGCGGACATGCTGACAATGAGCTTCAGGACAAGAAGGCGGAGAACAGAGGCGTAAACAAACCTCCCACCAGACAAGAC
GAAATAGGCGAAGGCACGCTTGCTAGGGTCACCAGGTGGGTAACGCTCATGGTTGTGGTCATCATACACAATCTTTGAGTTAGGTGTCTTGACAGCCTCA
ACGGTGGCTGGGACTTCAGAAGCAAAACCTATCTCGTTTCCTTGAGTAATGACTTGAGAAGAGAAACCTGATAATAGCATGAACAACATTAATATATTAT
TTCACATAAAGGCAAAAACTTTACTTACCGGTCAAGTGTTCTACAACAATAAGTATTATTAAGTAACAAACTGGTCAGCAAATGACACTGAAGAAAGAAC
TACCGCTAAATATTAATATATATAACCTTCTAAGGAGAATCATTAGTACATAAA