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Detailed information on CNT30370980


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 1e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696066Oryza glumipatulaOryza sativa72.3465.9699.81531forward
CNT30225034Oryza glumipatulaHordeum vulgare30.7937.691.15226forward
CNT30589596Oryza glumipatulaMusa acuminata38.0162.1488.17279forward
CNT30555055Oryza glumipatulaOryza glaberrima90.1961.4198.79662forward
CNT30103289Oryza glumipatulaOryza rufipogon91.016199.25668forward
CNT30556471Oryza glumipatulaPanicum hallii36.2453.4191.73266forward

Expression of CNT30370980

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

>peptide 2 (88 aa)
FLRPNALNFNPLNQRIHYLPRFDPIYCIRKFKALINPSMPQYKQFRLHIYTIHSQKWLYFGIGSICFRSNRDEKSANQNNTTDKYLDH*

Sequence

>CNT30370980
TTTTTAAGACCAAACGCTTTGAATTTTAACCCACTAAATCAGAGGATCCATTATCTTCCTAGATTCGACCCAATCTATTGTATACGTAAATTTAAAGCAC
TAATTAATCCTTCCATGCCACAATATAAACAATTTAGACTACATATTTACACTATACATAGCCAGAAATGGTTATATTTTGGGATCGGGAGTATTTGTTT
CCGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACAGATAAGTACCTAGACCATTAGTTGGGAAACGAATAAAATCATTATTGCAAAAAC
ATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGC
TGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTT
GTTGACGGGGTCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGCCGGCGATGCGGTACCCCTCG
ACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGA
AGATCTGCGAGCCCGCCTTGAACCACACGGCCTC