Detailed information on CNT30556471


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 2e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225034Panicum halliiHordeum vulgare44.5836.9492.34222forward
CNT30370980Panicum halliiOryza glumipatula53.4136.2491.73266forward
CNT30603508Panicum halliiOryza punctata44.5828.4394.14222forward

Expression of CNT30556471

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MKLQSGWSLVAGDEVGGVGPGVVVDRVGEGVEAAAGVERVDDLAERAAGNAVALDGAHEHDLAGPDGEDALGVDQAGVAEVVEPALAEDLGAGLEPD

>peptide 2 (41 aa)
MRQLAASMNPRTPPPEDNEVAERMELSCRGRSWWRRPRRCC*

>peptide 3 (41 aa)
PLKSDKSMINHQGTKIQNHYYCTNIIFHLSVQRQLIISTCP*

Sequence

>CNT30556471
TGCCCTTAAAATCTGACAAATCAATGATTAACCACCAGGGAACAAAAATACAAAATCACTACTATTGCACAAACATCATCTTTCATCTTAGTGTACAACG
CCAACTCATCATCTCGACCTGCCCCTGAAATGCAACGTGAAACAAGAGACACACATGCGGCAGCTTGCAGCATCAATGAATCCACGTACGCCCCCTCCGG
AAGACAATGAAGTTGCAGAGCGGATGGAGCTTAGTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACCGGGTCGGCGAGGGGGTCG
AAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCAATGCGGTAGCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCC
AGATGGCGAGGATGCTCTGGGCGTGGATCAGGCTGGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACG