« Back to Oryza glumipatula search


Detailed information on CNT30370554


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554139Oryza glumipatulaOryza glaberrima55.5312.8796.17678forward
CNT30102331Oryza glumipatulaOryza rufipogon55.8614.2498.39682forward
CNT30576747Oryza glumipatulaOryza barthii55.5310.996.17678forward
CNT30116141Oryza glumipatulaOryza nivara55.8623.4198.68682forward

Expression of CNT30370554

Peptides detected in this lncRNA

>peptide 1 (82 aa)
TRLTHPQRSPLILSRIIPLGKNPKIDPPLSLSPFSPAAGAARRGGFGGDFLPRVWSSSSPPASSRTDGIAPSLLDPPRHRKP*

>peptide 2 (62 aa)
MCPHAFMFWDCLFIAVRSLQKLHGVVFILLICQFACLGEYSGAFFMTDDAFPIFSFAIYWLA*

>peptide 3 (52 aa)
YKANPPTTKPINPFPNHPSRKKSQNRSASLSLPLLAGGRRGPARRIRRRFPS*

>peptide 4 (29 aa)
MIMRAILNHLFVLVCECDNNINGNYILRH*

>peptide 5 (29 aa)
MAASTITTCDYRHVVRFVRLPLLGDASSR*

>peptide 6 (34 aa)
MAMTAISPVSCMVPLHKRPDQGGVHVIHTCKLCQ*

>peptide 7 (47 aa)
MTVPLPTTRRRWRHRRLQPAITVMSCGSFVSPSSATPRAGNPRGWGT*

Sequence

>CNT30370554
CTACAAGGCTAACCCACCCACAACGAAGCCCATTAATCCTTTCCCGAATCATCCCTCTCGGAAAAAATCCCAAAATCGATCCGCCTCTCTCTCTCTCCCC
CTTCTCGCCGGCGGCCGGCGCGGCCCGGCGAGGCGGATTCGGCGGCGATTTCCTTCCTAGGGTTTGGTCTTCCTCCTCCCCTCCGGCCTCCTCTCGCACC
GACGGCATCGCCCCCTCCCTTCTAGATCCGCCTCGCCATCGAAAACCCTAGACGACCACGAGCCGCCATGACCGTCCCCCTTCCCACCACCCGCCGCCGA
TGGCGGCATCGACGATTACAACCTGCGATTACCGTCATGTCGTGCGGTTCGTTCGTCTCCCCCTCCTCGGCGACGCCTCGAGCAGGTAATCCACGGGGTT
GGGGTACCTAGGGTTAGCGTTTGTTCGGTGAATGGGGGGCGTCCGTTGCACGGCACGACCCGACCACTGGCTCCCGCATCCATGGCGATGACGGCGATAT
CTCCCGTCAGTTGCATGGTCCCCTTGCACAAACGCCCAGACCAAGGTGGAGTTCATGTTATTCATACATGCAAGTTATGTCAATGACACCTAACTGGTTT
AGTTTAGATCCTTGTGTCTCATTGTCTCCTTTGCAAGGCAGAAGTTCTATTTGATTAAAGCAATGCTGCAATGTATGTTGATTGTGAGGCAATGACTGAA
AAGGATGATTATGAGAGCAATACTGAATCACCTGTTTGTATTAGTATGTGAGTGTGACAATAATATTAATGGCAACTATATCCTTCGTCATTAGCTGGAA
GAACATTTTTTTTTGTTTTAAAAAGCAAATATAGCTCGTGTGATAGTACTTTTTATCGGTCTGGTTACCAATTTGTAGTCATGTGCCCTCATGCTTTCAT
GTTTTGGGACTGTCTGTTTATTGCTGTTAGGAGCCTTCAAAAGCTGCATGGTGTTGTATTTATTTTACTAATTTGCCAATTTGCATGTCTTGGTGAGTAT
TCAGGTGCTTTCTTTATGACTGATGATGCCTTCCCCATCTTTTCTTTTGCTATTTATTGGCTAGCTTAATCCAGAGTCTTATTCTGCTGTAGCTTTTGGG
GATTAAGTTAGTTTTTAGTCGCATATAGTGGAATTGATTGTCTTGTTTCAGCAAGCAAGATAAATTTCCACTCTTCCAACTGTATTATTTATTGCAAGCA
AGATAAATTTCCACTCCTCCA