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Detailed information on CNT30367958


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FRA7|Y5513_ORYSJ, E-value = 2e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673241Sorghum bicolorSetaria viridis9.1935.2387.62105forward
CNT30286102Sorghum bicolorTriticum aestivum10.0626.8183.48115forward
CNT30473984Sorghum bicolorSaccharum spontaneum36.3136.7391.81415forward
CNT3014940Sorghum bicolorZea mays18.3762.6981.43210forward
CNT30556972Sorghum bicolorPanicum hallii12.0731.5187.68138forward

Expression of CNT30367958

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MDVKTVQVIEKNSDFNMRIQYNTRDNITNETSRLKTKCMKNNQYPCTSDNSTRIGKFC*

>peptide 2 (49 aa)
MADLARPVAVPTRPASRTSFAAERARVGASFTTGGTRRSISSTDSPTCK*

Sequence

>CNT30367958
AAGCAGAAACATCAACATTGATATATAATTCTAATAGATACCCATTAATTTACACATCATTATCCATAGAACAAAGATAAACTTGTGTAGGCTCATTGCA
AGTTGTAACAAGCAGCAATGCCACCACACTAAACCACGCATGAGAGCTCCAGTTCACCATAGGAAACATAAAGACATTACACAGTAATACTTGCTACACC
ACATCTGAGTTCATACTTGATATAATTGATTATGTAGTTTCCATTCCATTCCATTCCATCTTCTACTGGGAGGGGATAGGCTGCATCTCTGGTGCTGGGG
CAACATCAGCCATGGGGTACGGGAACACCCGGGCGAGCCGCTCAGTGGGCACAAGCGGGAGATAGGTGGCCACAGTGTTCCCGCGCTTGGCACCATCACG
CACCGCTGAATTGTACCTGGCTGAGAGCTGCGCGGCTGTGGGGAGGACAGCCCTGGCGGTTCAGGGCCACCCAGGCTTCCGCAGCACGGCGCTCTGCCAC
GGGCTCATAGCGGGTGTAGAGCTCCCTGGCCTTTGGCTCCGCGCGGGCAATGGCTGACTTGGCAAGGCCTGTGGCCGTACCCACAAGGCCGGCCTCACGA
ACCTCCTTTGCAGCCGAGCGGGCAAGGGTTGGGGCTTCCTTCACCACTGGAGGAACGCGGCGGTCTATCTCCTCAACGGACTCACCAACCTGCAAGTAGG
GGACAACGTGCAAATCAATCTCATCTTTGTTCAGCAAGACAAAATGGATGTCAAAACAGTGCAAGTAATTGAGAAAAACAGTGACTTCAATATGCGTATA
CAATATAATACAAGGGATAATATAACTAACGAAACATCCAGACTTAAAACGAAGTGCATGAAAAATAATCAATATCCTTGCACAAGTGACAACTCTACAC
GGATAGGAAAATTCTGTTAAACGTCCCTGAAACATCACCTAAAATGACCAATATCCTTAGCACAAGTGACAACACTACATAGTTAGGCAAATTCAAGCTG
ATAAACGTCCCTCAAACATCAGGTTAGTGGACCGTGCTGATTAATCAACTACATCAACAAACTTGTCCAGAGTGTATGTGCGTGCTAGTAGTGTTTACAC
CAATTTAGTAAAGTTCTTGGTAAAACTAGCCAAAAGTGAGTGC