Detailed information on CNT30473984


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673241Saccharum spontaneumSetaria viridis9.3835.5783.96106forward
CNT3014940Saccharum spontaneumZea mays9.0330.4587.25102forward
CNT30367958Saccharum spontaneumSorghum bicolor36.7336.3191.81415forward

Expression of CNT30473984

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MQTPGRSAQWALAGDMWPQCSRAWHRHAPLNCTWLIAGVELPGLWLRTGNS*

>peptide 2 (52 aa)
MGYANTRAIRSVGTSGRYVATVFPRLAPSRTAELYLAHSGCRAPGPLAPHGQ*

>peptide 3 (71 aa)
MVLARQVLVPEPNQTSSSFGQSRSVLGYTPTAKHIHIGYSNCRNTSVKVSPGLYTNSQAHTHWVLKLQKHL*

>peptide 4 (45 aa)
YTFWAVRLGSKICRVKIRTYLEILGINWFIVPKKLVQQFLWPKPW*

>peptide 5 (47 aa)
HILGCSVGFQNLPSQNQNVPRNFGYQLVYSTKKIGTAIFMAKTMVSL*

Sequence

>CNT30473984
TACACATTTTGGGCTGTTCGGTTGGGTTCCAAAATTTGCCGAGTCAAAATCAGAACGTACCTAGAAATTTTGGGTATCAATTGGTTTATAGTACCAAAAA
AATTGGTACAGCAATTTTTATGGCCAAAACCATGGTAAGTTTATAGAAACTTTTTAAAGCTCACAAGAGAGAAAAGGATATTTGCTATCATATTTTGGCA
CCAGACCAAACACATGCCTTGACTTTTTGCCCTCATTTTCGTCAGCCCTAATTTTGGTTTGTCATGATTTTAGCATGCCATGGTTTTAGCTAGGCAGGTT
TTGGTACCCGAACCCAACCAAACAAGCTCTTCATTTGGTCAGTCAAGGTCAGTCCTGGGTTACACACCAACAGCCAAGCACATACACATTGGGTACTCAA
ATTGCAGAAACACTTCAGTCAAGGTCAGTCCTGGGTTATACACCAACAGCCAAGCACATACACATTGGGTACTCAAATTGCAGAAACACTTGTAATGAAC
CAAGTACACCCCAATGTCAGAGCCAGATATAAAAACTGATGACAAAGAACAATCATCAACATTGCTATAGAATTTAATAGATACCCATTAATGTACAAAT
CATTATCCATAGAACAAAGATAAACTTGTGTAGGCTCATTGCAAGTTGTAACAAGAAGCAATGCCACCACACTAAACCACGCATGCAAGCTCTAGTTTAC
CATAGGATACACAAAAACATAACACAGTAATACTTGCTACACCACATCACAGGGTTTATACTTGATATAATTGATTATGTAGTTTCCATTCCATTTCATC
TCCTACTGGGAGGGGATAGGCTGCATCTCTGGTGCTGGGGCAACGTCAGCCATGGGGTATGCAAACACCCGGGCGATCCGCTCAGTGGGCACTAGCGGGA
GATATGTGGCCACAGTGTTCCCGCGCTTGGCACCGTCACGCACCGCTGAATTGTACCTGGCTCATAGCGGGTGTAGAGCTCCCGGGCCTTTGGCTCCGCA
CGGGCAATAGCTGACTTGGCAAGGCCTGTGGCCGTGCCCACCAGGCCGGCCTGGCGAACCTCCTTTGCAGCTGAGCAGGCAAGTGTGGGGGCTTCCTTCA
CCACTGGAGGGACACGGCGGTCAATCTCCT