Detailed information on CNT30261767


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382112Brassica rapaManihot esculenta30.3415.3783.9581forward
CNT30144505Brassica rapaMedicago truncatula31.4612.9884.5284forward
CNT30213985Brassica rapaHelianthus annuus29.9615.078580forward
CNT30596550Brassica rapaOryza meridionalis40.8213.4282.57109forward
CNT30357882Brassica rapaLactuca sativa44.5716.9382.35119forward
CNT30370789Brassica rapaOryza glumipatula40.827.9282.57109forward
CNT30116923Brassica rapaOryza nivara40.8213.182.57109forward

Expression of CNT30261767

Peptides detected in this lncRNA

>peptide 1 (41 aa)
AASVRVPITSPAMFLAKFWSRESRSNWRYSAGLPKPKGSKP*

>peptide 2 (64 aa)
QRPRYGSRSRLRLCSWLSSGPESQDQTGDTPPVCLNRKGQNRSLRPANRRDTREISRLGTTEYP*

Sequence

>CNT30261767
CAGCGGCCTCGGTACGGGTCCCGATCACGTCTCCGGCTATGTTCTTGGCTAAGTTCTGGTCCAGAGAGTCAAGATCAAACTGGAGATACTCCGCCGGTTT
GCCTAAACCGAAAGGGTCAAAACCGTAGTCTCCGACCAGCGAACCGTCGAGATACTCGGGAGATTTCGCGCCTGGGAACCACAGAGTACCCATGATGGAA
GAAGCAGCAGCGGCTGTTGAAGTGGCGGCCATCTCGAGAGTTTGTTTGTGTTTAGCACGTTTGTGAG