« Back to Lactuca sativa search


Detailed information on CNT30355387


BLAST search results

BLAST vs Swiss-Prot:
sp|P24929|RK12_TOBAC, E-value = 1e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30207310Lactuca sativaHelianthus annuus23.2430.7186.18152forward
CNT30573129Lactuca sativaVitis vinifera30.5881.6382200forward
CNT30323277Lactuca sativaAsparagus officinalis15.942.2882.69104forward
CNT3036650Lactuca sativaCucumis melo25.6925.2680.95168forward
CNT30724786Lactuca sativaLupinus angustifolius34.2523.1281.25224forward

Expression of CNT30355387

Peptides detected in this lncRNA

>peptide 1 (59 aa)
ANMKKEKLPQIRDLNNRNFCASFFKLFLSLFCFISRYSFLEFLRKSFNKLFGLLKRQTR*

Sequence

>CNT30355387
GGCAAACATGAAAAAGGAAAAGTTACCACAAATTCGTGATCTAAACAATCGAAATTTTTGCGCCAGCTTCTTCAAGTTGTTTCTTAGCCTCTTCTGCTTC
ATCTCTCGATATTCCTTCCTTGAATTTCTTCGGAAGTCCTTCAATAAGCTCTTTGGCCTCCTTAAGCGCCAGACTCGTTAAAGCTCTAACGGCTTTAATC
GTCGCAATCCTCGCGTTACTAGGAACCTCATCAATCACAACATCGAACTCCGTCTTCTCCTCCACGGCAGCAGGAGCAAAGGAGGCGGCGGTGACTCCAA
GCTTGTCTTGGAGGTACTCAACTAGCTTTTGTGCATCTGCAAGGGTTAGGTTCGAAATTTCATCGCCTAGCTCTACAACCTTCCCCTCGGCAACGGCGGC
AACGGGGCGGAGAAATGTCGATCGGTGGGAGAGTTTAGGGGTTCGGAGGGGGAATTCTAGGGTTTGTTTGGGGGAAAAGGCTGCGGGAGATGCAGCTTGA
GTGGTGGCAGCGTAGGAAGGATAAGAGAAGGAGCGCAAAGTAATTGTAGAGAGAGTAGAAGACGCCATTAGAGCAGAGCTCGGGAGAGACTGCAAGAGGG
GACTGGGGAACGAATGGAGAGATAGGATAAGAGGATAGAGAAGTTTGGTTGATT