Detailed information on CNT30106963


BLAST search results

BLAST vs Swiss-Prot:
sp|O64477|Y2913_ARATH, E-value = 3e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554296Oryza longistaminataOryza glaberrima10041.05100227forward
CNT30450663Oryza longistaminataSaccharum spontaneum58.597.9390.23133forward
CNT3012901Oryza longistaminataZea mays53.7442.6693.44122forward
CNT30350637Oryza longistaminataEragrostis tef66.9631.0286.84152forward
CNT30580708Oryza longistaminataEchinochloa crusgalli48.463.9988.18110forward
CNT30498486Oryza longistaminataDigitaria exilis44.053.3888100forward

Expression of CNT30106963

Peptides detected in this lncRNA

>peptide 1 (37 aa)
WGLTRSAHHLPVVCLQPKLGRKRTFPPPLDQHSFCLI*

>peptide 2 (45 aa)
LGSNKVCTSPSCSLFTAKVGKKEDFPSSPRSAFLLPDMSSKSIMP*

Sequence

>CNT30106963
CTGGGGTCTAACAAGGTCTGCACATCACCTTCCTGTAGTTTGTTTACAGCCAAAGTTGGGAAGAAAGAGGACTTTCCCTCCTCCCCTAGATCAGCATTCC
TTCTGCCTGATATGAGTTCGAAGAGCATCATGCCATAGCTGAAGACATCTGCCTTAGGAGTAATCGGCACACCACTGATCCACTCAGGCGCAAGGTAATT
TAGGCCCCTTGCTGTTCCAAGTGCAAT