Detailed information on CNT30580708


BLAST search results

BLAST vs Swiss-Prot:
sp|O64477|Y2913_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554296Echinochloa crusgalliOryza glaberrima10.2651.1885.16283forward
CNT30439328Echinochloa crusgalliAegilops tauschii5.5532.0885.62153reverse complement
CNT30450467Echinochloa crusgalliSaccharum spontaneum97.3993.8889.652686forward
CNT30350637Echinochloa crusgalliEragrostis tef13.8177.7690.29381forward
CNT30106963Echinochloa crusgalliOryza longistaminata3.9948.4688.18110forward

Expression of CNT30580708

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MQLQNGRALRLQLPYAPQSPYTSHCVRGCDQNKIHCCALSSHVSCLICPSTSMMNLEMTSLSFIE*

>peptide 2 (63 aa)
MNLLLLDTIFCAPDSGVEELMVSTAAQSRIWLSGRRRKKKKEAMDGSSEEQPGLGVGSFGLLE*

>peptide 3 (56 aa)
MAVESESFPLNTEPKAPPPSLSEKLLVTCCRSLYLKAIRVPPAVLDIRRVLSRRYF*

>peptide 4 (52 aa)
MARERGWRCSSMEQAAGSRQWSCSAQACPPEAMCLWGDLCFANTLLMNWRHQ*

>peptide 5 (88 aa)
MLRQYTVDELAASMRSRLPLSWRTAMVELDPTLTLVDHNRRFLDWSRRTRFPSLPMVKAAVVGSVTGMSELAIHTVVCCGMLLYHMAM*

>peptide 6 (51 aa)
MKYCVVPLGSSSSENGPGEGLALFLHGTSRWLTPVVLFSPSLPPGSHVFVG*

>peptide 7 (47 aa)
MGKLARVNATVVPFVILVVTLCTKLAVLKHSTIQKLRILGSNYVQHS*

>peptide 8 (32 aa)
MHQQATLQALVSSSTFAFPFSLGSNKVCTSPS*

>peptide 9 (39 aa)
MPNKAAAAVVSVSITRATALTSHLTVLRAPSHGSLCIIR*

>peptide 10 (41 aa)
MNSYTSSLRDPSEQNPSRRTKLTCWIVPMVLTSARNCFSPW*

>peptide 11 (47 aa)
MITVLPFLESGSSEAASLRKSVPSPFPLYCSWRLIRSPCQTKQPLLL*

>peptide 12 (30 aa)
MLQIAVPKGDQSAPSSLGYPKSPLSAVFLK*

>peptide 13 (30 aa)
IFCTCKANGEACTCKCYSSSVCYIGCYTLH*

Sequence

>CNT30580708
TGATATTTTGCACTTGTAAGGCAAATGGGGAAGCTTGCACGTGTAAATGCTACAGTAGTTCCGTTTGTTATATTGGTTGTTACACTCTGCACTAAACTTG
CAGTACTGAAGCATAGCACGATACAAAAGCTGAGAATATTAGGTTCTAATTATGTACAGCACTCATAATAATCTTCAAGCATTCTCCCTAACAATTTGCA
GGTTATCTGATTTATGAACTTTGGGAATGTGAACTGCCCGAAGTAGCACTGTGTGTCTGGGAAGTTGTGCTATTCTGTGCCTGAGAAGTCTGACTTGAAG
ATATATCTGAAAAGAAGTTTATAGCATCAGGACTTTCACCAAGAACTCTTAATGACCTTGGAACAGGGGGCATGTTAACATCAAGGAATCCCTCGAGGAT
TTGAACAATCTGACCAGTTGTGGGTCTAGCACTTTCGTCATCTTGGATGCACCAACAGGCAACCTTACAAGCTCTTGTGAGTTCATCAACATTTGCATTT
CCATTTAGCCTGGGGTCCAACAAGGTCTGCACATCTCCTTCATGAAGCTTGCTTGCAGCAAAGGTTGGGAAGAAGGTGGCTCCGTGCTCTTCTCCGTGAT
CAGAATTTCTCCTTCCTGATATGAGTTCGAAGAGCATCATGCCATAGCTAAAGACATCTGCCTTTGCTGTTATTGCCACACCACTGATCCACTCAGGTGC
CAGGTAACCCCTTGTTCCTCTCATTGTTGTCAATACACGACTGAAGTCTCTGCCTAAGAGCTTCGCTAGACCAAAATCAGCCACTTTAGGCACAAATGAC
TCATCCAAGAGTATGTTTTCTGGCTTGACATCACAGTGTATAATGCAATCCCTACATTTTTCATGCAGGTAATTTAAGCCTCTTGCTGTTCCAAGCGCTA
TTTGGTACCTGGTGGCCCAGCTCAGTGCTGGCTTGCCAGGGAATAGCTGCAAGTCCAGGGAACCCTTTGGCATGAACTCATACACAAGCAGCCTCCGTGA
TCCTTCAGAACAAAATCCAAGTAGGCGGACCAAATTGACATGCTGGATCGTTCCAATGGTGCTCACCTCAGCACGGAATTGCTTCTCCCCTTGGTGAACT
CCATCTAGCCTCTTCACAGCAATGGCAGTTGAATCTGAGAGCTTCCCTTTGAACACTGAGCCAAAGGCACCTCCACCTAGCCTATCTGAGAAGTTATTAG
TGACATGCTGCAGATCGCTGTACCTAAAGGCGATCAGAGTGCCCCCAGCAGTCTTGGATATCCGAAGAGTCCTCTCTCGGCGGTATTTCTGAAATAGGAA
GTATGACACAATAGCAAGGACTATTAAAACTGCGGCAACTCCACCAACAACTGCAGCAATGATCACTGTCTTGCCCTTTTTGGAGTCTGGCAGCTCAGAA
GCTGCAAGCCTGAGGAAGAGTGTACCTTCTCCATTTCCACTGTATTGTTCTTGGAGGTTAATTAGGTCCCCATGCCAAACAAAGCAGCCGCTGCTGTTGT
AAGCGTAAGCATTACAAGAGCAACTGCTCTGACAAGCCACCTGACAGTCTTGAGAGCTCCCAGCCACGGCAGTCTGTGCATTATCAGGTAGCCTCACACT
TGCCATGGTATAGAACTTATCAGGCTTGGCTTGTGCAGAGCTCGAATTTGTCTGGCACTGCAGTGGTACTCTCCTTTTACACCCACCACTGAAATCCTGG
AGGTCCCAATCGCTCTGAACCTTCTGAGTGAACCCCTTGATGCAGTTGCAGAACGGCAGGGCATTGAGGTTGCAGCTTCCATACGCCCCACAGAGTCCAT
ACACCTCACACTGCGTCCGTGGTTGCGACCAGAACAAGATCCACTGCTGCGCGTTGTCCAGCCATGTCAGCTGCTTGATCTGCCCATCTACGTCGATGAT
GAACCTCGAGATGACATCATTGTCCTTCATCGAGTAGATGAAGTAGCTCTCAGTGCCATTGTCGATGAACTGGAAGTTGTAGTTGTAACCAGATGTCATC
TCCGGCACAAGGCTAAAAATATTTCCATTCCAAGGACCGCTGGTCCAGTATGTTATGGAATCATTCCACTGAATGAAGTATTGTGTTGTGCCTCTTGGAT
CCAGCTCCAGTGAGAATGGCCCGGGAGAGGGGTTGGCGTTGTTCCTCCATGGAACAAGCCGCTGGCTCACGCCAGTGGTCTTGTTCAGCCCAAGCTTGCC
CCCCGGAAGCCATGTGTTTGTGGGGTGATCTATGCTTCGCCAATACACTGTTGATGAACTGGCGGCATCAATGAGGTCAAGGCTTCCACTATCCTGGAGG
ACGGCGATGGTGGAGTTGGATCCGACGCTCACGTTGGTCGACCACAACCGCCGGTTCTTGGATTGGTCAAGGAGAACAAGGTTCCCATCGCTGCCGATGG
TCAAGGCAGCGGTGGTCGGGTCTGTCACCGGCATGTCGGAGTTGGCCATCCACACAGTCGTCTGCTGCGGTATGTTGCTGTACCATATGGCGATGTAGTA
GTTGCTGGAGCTTGAGGTGGTGGTGTTACCTTGGGGCGGGGTGTAGAAGCCCAAAATGAACTTGTTGCTCTTGGACACAATCTTCTGCGCCCCGGACAGC
GGTGTGGAGGAGTTGATGGTGTCGACGGCTGCGCAGAGTAGGATCTGGCTGAGTGGCAGGAGGAGGAAGAAAAAGAAAGAAGCCATGGATGGGAGCTCGG
AGGAGCAGCCAGGGCTGGGGGTGGGGAGTTTTGGACTTCTGGAGTAATTAGAAGCGGT