CANTATAdb - search

Detailed information on CNT30589867

BLAST search results

BLAST vs Swiss-Prot:
sp|P35793|PR13_HORVU, E-value = 1e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30671790	Musa acuminata	Setaria viridis	9.23	24.11	88.89	54	forward
CNT30345634	Musa acuminata	Eragrostis tef	19.83	26.98	85.34	116	forward
CNT30371121	Musa acuminata	Oryza glumipatula	13.85	25	85.19	81	forward

Expression of CNT30589867

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MFSPSGRTPRRCCPTTRGRRRRRRGRRCGGSRSPGASSGLGHWCRPWQEPRRRA*

>peptide 2 (38 aa)
APDGRGRTPHYLRVVAAHLVRGALVAVVVVCFILVVIE*

Sequence

>CNT30589867
GCACCCGATGGCCGTGGACGAACGCCACACTACCTGCGTGTAGTGGCCGCACACCTTGTTAGGGGCGCACTTGTTGCTGTTGTGGTTGTATGTTTTATTC
TTGTAGTTATTGAGTGATCTTAGTAAGGGCGCTGCCCCACATAGTTGCCCGGAGGTTTGTAGTTGCAGATGATGAAGATGGCGCCGCTGTTGCAGCGCAC
ACGGCCGCACCCGATGGCCGTGGACGAACGCCACACAACCTGCGTGTAGTGGCCGCACACCTTGTTAGGGGCGCACTTGTTGCTGTTGTAGTCGTAGTCC
TGCTTCTCGGAGACCCAGGCGTTGACGGCGTCTGCCGCCGTGTAGTCGCGACCGGAGCCCCAGAAGATGTTCTCGCCTTCTGGGCGTACGCCGCGACGGT
GTTGTCCCACGACACGGGGCCGACGCCGACGGCGGCGCGGGCGGCGTTGTGGGGGCTCACGAAGTCCTGGGGCGAGTTCTGGGCTAGGGCACTGGTGCAG
GCCATGGCAAGAGCCACGGCGAAGAGCATAGCCAAAGCTGAGTTTGAGGACCTCATTCTACTCGATCGCCTTCCTCTTCTTTTCC