Detailed information on CNT3031620


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530597Theobroma cacaoEucalyptus grandis32.0426.6780.71140forward
CNT30550019Theobroma cacaoIpomoea triloba22.4317.9886.7398forward
CNT30431245Theobroma cacaoPapaver somniferum66.5931.1981.79291forward
CNT3025596Theobroma cacaoPopulus trichocarpa58.8148.7781.32257forward

Expression of CNT3031620

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSIQECLFAQDKPHPTSALTEFLSRKFQGESAAEQ*

>peptide 2 (30 aa)
IEQSVWHIDWTNTVLQLLVLVHLYNSFLNS*

Sequence

>CNT3031620
GGATAGAGCAAAGTGTATGGCATATTGACTGGACCAACACGGTTCTTCAATTGCTCGTCCTTGTTCATCTCTACAATTCTTTCCTCAATTCCTGAAAGCC
TCTTTCCGAATTCCTCAAAAGCTGCTAGTGGTGTTGCATCTGATGTCCATTCAGGAGTGTCTCTTTGCCCAAGATAAACCTCATCCGACGAGTGCCTTGA
CAGAATTTCTATCAAGGAAATTCCAAGGAGAGTCTGCAGCTGAGCAGTGATTGTTTTCAAGTAAGCCTTGTCAGGGTTCGACTCGAGCTCAGCATATTCA
GGGGTGCCTTTCTCTGGCATGAACCTGCGGCTTATAGTTGGGCGGTTGGGGAGGTAGCCTGCATAAGGATATTGGCCAAAGTTAACCGCTGCATGGAGAG
CAGAGGCGACCCATATGATGATGGTGCACGTATCTAT