Detailed information on CNT3025596


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43191|LOX15_SOLTU, E-value = 9e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30709697Populus trichocarpaGlycine max20.8721.5782.73110forward
CNT3042841Populus trichocarpaPrunus dulcis54.6550.782.99288forward
CNT30704118Populus trichocarpaPrunus avium54.4635.4381.53287forward
CNT3031620Populus trichocarpaTheobroma cacao48.7758.8181.32257forward

Expression of CNT3025596

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MIMVHDSISSSRVCIFGHQGASFWSPCPSSLASFHHDCSSESF*

>peptide 2 (62 aa)
PRYTSSEECLDRISMREMPRSVCNWAVIVPKKNLSGFDLSSSYSGEPFCGMNRRLVLGRFRR*

>peptide 3 (57 aa)
MILLALHESASLATRVHLSGHHALPLSLPSTMIVVQNLFESCHHPCSRKSSSLLPIL*

Sequence

>CNT3025596
CCAAGATACACCTCGTCTGAGGAATGCCTTGATAGAATTTCTATGAGGGAAATGCCAAGAAGTGTTTGCAACTGGGCAGTGATTGTTCCCAAGAAAAACT
TGTCAGGGTTCGACTTGAGTTCCTCGTACTCAGGAGAGCCTTTCTGTGGCATGAACCGACGGCTTGTGCTTGGACGATTCAGAAGGTAGCCTCCATAAGG
GTATTGCCCAAAGTTGACAGCTGCATGAAGAGCAGATCCCACCCATATGATTATGGTACATGATTCTATTAGCTCTTCACGAGTCTGCATCTTTGGCCAC
CAGGGTGCATCTTTCTGGTCACCATGCCCTTCCTCTCTCGCTTCCTTCCACCATGATTGTAGTTCAGAATCTTTTTGAATCATGTCATCATCCTTGTAGT
AGAAAAAGCAGTAGTCTTTTACCCATTCTTTGATTGCAAACCATATCTCTAGCCCATCAACTGCATATGGGTAATCTTTTATCAGCAGGCGAACACCGTG
TGGAGCCTTTGGATCCTCAACTGCCAC