Detailed information on CNT30550019


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43191|LOX15_SOLTU, E-value = 4e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3090559Ipomoea trilobaSolanum tuberosum33.2125.8282.32181forward
CNT3031620Ipomoea trilobaTheobroma cacao17.9822.4386.7398forward

Expression of CNT30550019

Peptides detected in this lncRNA

>peptide 1 (70 aa)
GRVGCMALSQALSCFSVFPQCSFSLCCPRFHRALFQIVQMHLVLPGPLSTRGTLFSLGTPHPKHALTEFQ*

>peptide 2 (80 aa)
GKSRVYGTFTGPVLFFSFPSVFIFIMLSSISPSFVPNRANASSASWSFVHSGHSLFPRYTSSEACLDRISIRETPRRVCN*

>peptide 3 (41 aa)
MVHESISSWTVCIFGHHGLSFKSPCPCSLSSFHQACSSVSF*

>peptide 4 (42 aa)
MSLLSELLPPGLQFSIFLNHVIRFVIDLAVVLYPCFDGRPYF*

Sequence

>CNT30550019
GGGAAGAGTAGGGTGTATGGCACTTTCACAGGCCCTGTCCTGTTTTTCAGTTTTCCCTCAGTGTTCATTTTCATTATGCTGTCCTCGATTTCACCGAGCT
TTGTTCCAAATCGTGCAAATGCATCTAGTGCTTCCTGGTCCTTTGTCCACTCGGGGCACTCTCTTTTCCCTAGGTACACCTCATCCGAAGCATGCCTTGA
CAGAATTTCAATAAGGGAAACACCAAGGAGAGTCTGCAACTGAGCAGTGATTGTTTTGAGGAAAACCTTATCTGGATCAGCCTCAAGCTCCTTATAGTCA
TCTGTTCCAGGCACAGGCTATCCAGATAATAATGGTACATGAGTCGATCAGCTCCTGGACTGTCTGCATTTTTGGCCACCACGGCTTGTCTTTCAAATCG
CCATGTCCTTGCTCTCTGAGCTCCTTCCACCAGGCCTGCAGTTCAGTATCTTTCTGAACCACGTCATCAGATTTGTAATAGATCTTGCAGTAGTCTTGTA
CCCATGTTTTGATGGACGACCATATTTCTAGCCCATCAACAGCAT