CANTATAdb - search

Detailed information on CNT30316048

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-100

BLAST vs NONCODE:
NONGMAT000502, E-value = 8e-60

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30699961	Corylus avellana	Quercus lobata	35.97	43.38	90.2	459	forward
CNT3019830	Corylus avellana	Citrullus lanatus	36.36	41.92	86.64	464	forward
CNT30506303	Corylus avellana	Nicotiana attenuata	36.36	56.79	87.07	464	forward
CNT30120625	Corylus avellana	Citrus clementina	33.86	39.56	89.12	432	forward

Expression of CNT30316048

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MYNVIYRLIRGSKTNITDFRKLKYRSLVICRFRYDSKSKIGKFVEIRSY*

>peptide 2 (31 aa)
MVSELSTSRVMVLPVRVLTKICICENTETEI*

>peptide 3 (40 aa)
MVSELSTSRVMVLPVRVLTKICIPPRRRSTRWRVDSFWIL*

Sequence

>CNT30316048
GCATATATAATAATTGTTTTTTAAAAGAGAAACTTGAACATTAACATTAAACATTTATTTTAAATCCAAAAGGGGGGGTGGGTTGAGCGCCAATCCATCA
GAAACCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTACGACCGTCCTCCAGCTGCTTTCCGGCGAAG
ATCAACCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTATCAATGGTGTCCGAGCTCTCCACCTCCAGGGTGATGGTCT
TGCCGGTGAGGGTCTTGACGAAGATCTGCATTCCACCGCGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATATTATAGTCGGCTAGGGTGCG
GCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATTCCCTCCTTATCCTGGATCTTAGCCTTAACGTTGTCGATGGTGTCT
GAACTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCATCTGTGAGAATACAGAAACAGAGATTTGAGCTACGAAGCCTA
CGATATCGTTTCTTTATGCTATCCTTTTAAAGGAATTAAGGAAATTAGCAAAATCCTTTATAAGTATCAAAATTAGATTCGACTTTCAAGGACCAAAGAC
AATTTGGCAAATTTCTGAAAATTTCAGTATGTGATCAAACATAAAAGACTAGCAAATTCCTGAAAAGTTAAGTGTTGGATCAGATATAGATCCAACAAGC
GCGAGAAAATTGGAAAATATTAGCAAAACTCAAGTCTATGGCACAAACACAATATTAGCAACTTTCTGAATATTCAGTACAGATCTGTTGTGATCTATCT
GATCAGAATGGGTTAAAAGGAAAAAATAACAAATTTCTAACATTTCCAGCACAGATCTGCCGTGATCTGTAAACATCTTTCTGTTATTTTAGTAACATGT
ATAACGTGATCTATCGGCTAATAAGGGGCTCAAAAACGAACATAACAGACTTCCGAAAACTTAAGTACAGATCTCTTGTGATATGTCGGTTCAGATATGA
CTCAAAAAGCAAAATCGGTAAATTCGTAGAAATCAGATCTTACTAGATCTAGCACATCTTAGTTCAACATCGGTTTGATCCTTACAGATCCACAATACAT
CAACAATATTACTTCAATTTCGGTTATGAATTTTCCAGATCCGATAAATCAAAATCTACATCGAAGTAATTTTCTG