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Detailed information on CNT30506303


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-102

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-81

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316048Nicotiana attenuataCorylus avellana56.7936.3687.07464forward
CNT30547448Nicotiana attenuataIpomoea triloba51.4160.6188.1420forward
CNT30699961Nicotiana attenuataQuercus lobata56.1843.3888.24459forward
CNT30616366Nicotiana attenuataSesamum indicum53.1251.0687.79434forward
CNT30562220Nicotiana attenuataActinidia chinensis56.6757.0285.96463forward
CNT30541492Nicotiana attenuataBrassica napus57.4137.6485.29469forward
CNT30234332Nicotiana attenuataBrassica oleracea57.4139.2185.29469forward
CNT30171140Nicotiana attenuataTrifolium pratense56.1828.2885.19459forward
CNT30203004Nicotiana attenuataHelianthus annuus56.1840.1286.06459forward
CNT30620193Nicotiana attenuataCajanus cajan55.9471.1885.78457forward

Expression of CNT30506303

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVIVLPVRVLTKICIPPRRRRTK*

>peptide 2 (33 aa)
KLDIRTEFRIFIHNREHKKKSEQKQNRTTSRPQ*

Sequence

>CNT30506303
AAAAACTAGACATTAGGACAGAATTCAGAATCTTTATTCACAACAGAGAACATAAAAAGAAAAGCGAACAGAAACAGAATAGAACGACTTCGAGACCTCA
ATAGACAAAGCACATACAACCACAACTAGAAACAGACACAGCCAATCAACACAACACAACGACATCACCAACAGGCAACCTAGAAACCACCACGGAGACG
GAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGCGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCT
GGTGGAATTCCCTCCTTATCCTGAATTTTGGCCTTGACATTATCGATGGTGTCAGAACTTTCGACCTCAAGGGTGATTGTTTTGCCGGTGAGGGTTTTGA
CGAAGATCTGCATCCCACCTCGGAGACGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTT
GCCGGCGAAGATAAGCCTTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATTTTGGCTTTTACGTTGTCGATTGTGTCGGAACTCTCGACCTCAAGA
GTGATGGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTGTAATTATATAATAACAACAACAAACAATTAAAACAATGAACTTCAAAATTAGGGCT
TTAGATACCCAAATCGTTGATTCAATAAAAAAGAACTGCTAAAGCGAGAAATTGAGGAAATTCTCAAACCTTGAGAGAGAAATATGAAGCCGATGAAAGA
AGTAAAGAAGATTAATC