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Detailed information on CNT3019830


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 2e-95

BLAST vs NONCODE:
NONGMAT000502, E-value = 1e-73

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316048Citrullus lanatusCorylus avellana41.9236.3686.64464forward
CNT30513636Citrullus lanatusJuglans regia42.0170.9985.81465forward
CNT30379273Citrullus lanatusManihot esculenta41.8268.3985.1463forward

Expression of CNT3019830

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MKSGFLLNVVIGKGSPIFQLLSGKYQSLLVWGDTFLILDLGLHVINSVGRLHLKGDGLSGKGLDEDLHATTEPEHEVKS*

>peptide 2 (75 aa)
MAANKATHTCQVFPFPEEKFRNHHGDEGQDEEWIPSECCNRQGFAHLPTAFRQISISAGLGGYLPYPGSWPSRYQ*

>peptide 3 (29 aa)
ECYCNYLITILREVLPIYLSEPTSIIHII*

>peptide 4 (41 aa)
MVSEDSTSRVMVLPVRVLTKICIYTERNRDIRFSIPSQQTG*

Sequence

>CNT3019830
CGGAATGTTACTGTAACTATTTAATTACCATTCTCAGAGAAGTACTTCCAATTTATTTATCTGAACCCACTAGTATTATACATATCATATAGAATACTGT
TCTCCCTAAATTGCGAACTTGAGAGAACATTTAGAAACAACATACTTGAAAAGCAAAAGAAACAGAAGTATCCCAAACTCATTCCCATGGCCGCAAACAA
GGCCACCCACACATGCCAAGTTTTCCCATTTCCAGAAGAAAAGTTCAGAAACCACCACGGAGACGAAGGACAAGATGAAGAGTGGATTCCTTCTGAATGT
TGTAATCGGCAAGGGTTCGCCCATCTTCCAACTGCTTTCCGGCAAATATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTT
CACGTTATCAATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCATGCCACCACGGAGCCGGAGCACG
AGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAAACGTTGCTGATCCGGGGGGA
TTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTAACGAAGAT
TTGCATCTATACAGAACGAAACAGAGATATCAGATTCTCAATTCCATCTCAACAAACTGGGTAAACAGATCAGAATTACATAGTTTAAACCTAAATTCTA
TTTCTTTAAATCAGAATCGTACTGTTGAAAACCTAATTGAAGATTTCATACCATCAGAAAAATCCCAATTTTCCAGGCAACCACGTAAAAACTTAGCAAA
ACCCAGAGATATGACAACAATCATAAACTTTAATTCGATCAAAGAGCAGATCTAGCCACAAAATCTCAAGTACCCTACAAGGATGCTCAGTTCTATAATT
CACACAACTGAGAGCATCTCAAACGGAATTCTCTATTCAAAATCCTAAACATTTCATCTCTCAAGGCCAAACAACATGATCAAACAAGAAATGAAAGCAG
AAAAATA