Detailed information on CNT30315733


BLAST search results

BLAST vs Swiss-Prot:
sp|P52777|PALY_PINTA, E-value = 5e-119

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516353Corylus avellanaJuglans regia21.5916.191.45152forward
CNT30225206Corylus avellanaHordeum vulgare6.6821.9691.4947forward
CNT30572080Corylus avellanaVitis vinifera67.1975.285.2473forward
CNT3037983Corylus avellanaCucumis melo32.8132.9183.12231forward
CNT3040158Corylus avellanaMarchantia polymorpha35.3732.4278.31249forward

Expression of CNT30315733

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MFSSRCLRSTAWQSATMYVADISFRISMASALFLAEIKPREFTS*

>peptide 2 (57 aa)
AVGTRGHKRDLWGRPDKRIPAGVQLPATILSRRSGIQAAIHLQQCKGSSSQLGGRHV*

>peptide 3 (62 aa)
MSFPIAATAMRRLSMETPIGVPWKFPPWRAISRATSINGLSFTELISLSIECVAMRITSIWGP

>peptide 4 (97 aa)
SQLGQEGIRGICGVVQIREYRQVFNYLQQFFLAEAGFKQRSIFSSVKGLPHNLEDDMFDNLPHVLLQMSQINCLAKRHHVCGRHKLQDLNGFCTLSG*

Sequence

>CNT30315733
TCGCAGTTGGGACAAGAGGGCATAAGAGGGATTTGTGGGGTCGTCCAGATAAGAGAATACCGGCAGGTGTTCAATTACCTGCAACAATTCTTTCTCGCAG
AAGCGGGATTCAAGCAGCGATCCATCTTCAGCAGTGTAAAGGGTCTTCCTCACAACTTGGAGGACGACATGTTTGACAACCTCCCTCATGTTCTCCTCCA
GATGTCTCAGATCAACTGCCTGGCAAAGCGCCACCATGTATGTGGCAGACATAAGCTTCAGGATCTCAATGGCTTCTGCACTCTTTCTGGCTGAAATCAA
ACCCAGAGAATTTACATCTTGATTGTGTTGTTCGGCACTCTGTACGTGTGTTGTGACAGGGTTGGCCAGGTACTGAAGCTCAGAGCAGTATGCAGCCATG
GCTATCTCTGCCCCTTTGAACCCATAATCCAAGCTTGGATTAGGCCCGCCGCTCAAATTGGAAGGCAACCCATTGTTGTAGTAGTCACATACGAGCTCAG
AGAATTGAGCAAACATGAGTTTCCCAATTGCTGCAACGGCAATGCGGAGATTGTCCATGGAGACACCGATTGGTGTACCCTGGAAATTCCCTCCATGGAG
AGCAATATCTCGAGCAACATCGATCAATGGGTTGTCATTCACAGAATTGATTTCCCTTTCAATTGAATGCGTTGCCATGCGAATAACTTCAATTTGGGGT
CCGA