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Detailed information on CNT30516353


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94HW2|POLR1_ARATH, E-value = 2e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315733Juglans regiaCorylus avellana16.121.5991.45152forward
CNT30572080Juglans regiaVitis vinifera1624.0184.11151forward

Expression of CNT30516353

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MINKRDFIYKSFDSVQVLLNRLISLLYQSQFLFELHSPSSGFAGIHCV*

>peptide 2 (33 aa)
MKNQYLFVNGSNLRKQPVAGKWLQVGVGRHRDQ*

Sequence

>CNT30516353
GGAATTAAAACCTCTAGATGAAGAACCAGTACCTGTTCGTCAATGGGAGTAATTTGCGGAAGCAACCAGTTGCTGGGAAGTGGCTTCAAGTCGGCGTAGG
TAGGCATCGTGACCAATAAGGAGATCATGTAACTCCTCAAAGGTAAGTGGGCGTTCCCGGGCACGAATGGGGGCTGTAATCTCACGGAAATCAGCGCCCA
AGCCATTGAGAATGTAAAGGGTCAGATCATCTTCGGAAATGGGATGATCAATAAGAGAGATTTCATCTACAAGAGTTTTGACAGTGTGCAGGTACTCTTG
AACCGTTTGATTTCCCTTCTTTATCAGAGTCAATTCCTCTTTGAGTTGCATAGCCCTAGTTCAGGATTTGCTGGCATACATTGTGTGTAATTTTTGCCAA
GCTTCCTGAGAGGTTTCTGAAATGGAAATGAATGGTGTAATTGTAGTGGTTGTGGAGGCCAAAATAGCAGAGAGGATAAGTTTATCTTGTCTTATCTAGT
GGGTTCGTTGAGGGTTGGAGATGGAGGAATCATTGGAGGGCGGGCAACGTTTATCTCTTGTAACATAATCAAGGAGATTATACCCAATAAGTAAAGCTTC
GAACTGGGCGCGCCATTGAGGAAAAGTGGAAGGAGTGAGTTTTTCATTGATCTGTGAGGTAATATTGAGAGCTACAAGAGGAATTTCTGTGGGAGATGGT
GGGTTTGAGATTGGATTTTGAGTATGTTCAGAGGTGGGGATCGAATTCTCGTTGGAGGACGGCTCTCCTGATACCATGATGAAATTTAAAAAAGGGTTTG
CCAAGTATTGGAGCTCAGAGCAATATGCAGCCATGGCTATCTCTGCGCCTTTGAAGCCATAATCCAAGCTTGGATTAGGCCCCCCACTCAAATTGGAAGG
CAAGCCATTGTTGTAGTAATCACATACAAGTTCAGAGAATTGAG