Detailed information on CNT30225206


BLAST search results

BLAST vs Swiss-Prot:
sp|P14717|PAL1_ORYSJ, E-value = 2e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315733Hordeum vulgareCorylus avellana21.966.6891.4947forward
CNT30607757Hordeum vulgareGossypium raimondii32.2423.4785.5169forward
CNT30149709Hordeum vulgareBrachypodium distachyon35.052597.3375forward
CNT30100237Hordeum vulgareOryza rufipogon46.266.2187.8899forward
CNT30592972Hordeum vulgareEragrostis curvula47.6628.185.29102forward

Expression of CNT30225206

Peptides detected in this lncRNA

>peptide 1 (69 aa)
GRRALLHQWVVGAACVVGVAEHGLAVDGGDEALLAEARAGEVDGLAQRHHVCGGHELQDVHSLGGLPGRD

>peptide 2 (43 aa)
MAVMRLFSLKRALERSMAWHSATMYVEDMSFRMSTASAVFLAET

Sequence

>CNT30225206
ATGGGCGCCGTGCCCTTCTGCATCAGTGGGTAGTTGGCGCTGCATGCGTCGTCGGCGTAGCTGAACACGGCCTCGCGGTCGATGGCGGTGATGAGGCTCT
TCTCGCTGAAGCGCGCGCTGGAGAGGTCGATGGCCTGGCACAGCGCCACCATGTATGTGGAGGACATGAGCTTCAGGATGTCCACAGCCTCGGCGGTCTT
CCTGGCCGAGACGA