CANTATAdb - search

Detailed information on CNT30311003

BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30377890	Camelina sativa	Arabidopsis thaliana	56.45	82.51	92.33	665	forward
CNT30511543	Camelina sativa	Solanum lycopersicum	75.3	80.13	81.85	887	forward
CNT3061767	Camelina sativa	Arabidopsis lyrata	78.95	56.95	88.92	930	forward
CNT30480747	Camelina sativa	Arabidopsis halleri	84.63	85.95	90.37	997	forward

Expression of CNT30311003

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVMVLPVNVLTKICIPPLKRRTKWRVDSFWML*

>peptide 2 (30 aa)
MVLPVRVLTKICIPPLRRSTRWRVDSFWIL*

>peptide 3 (71 aa)
MESRLLLDIVVSKSPSVLKLLTSEDKPLLVRWDSLFILNLCFDIVNGVRALNLEGDGFACQRLDKDLHTTS*

>peptide 4 (36 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVSVFTKICIW

Sequence

>CNT30311003
TCACCCTCTGTTCTCTGCTTCGAACATACATATTTGGACAATAATTGAAAGCGGAATGTTTAACATGCACTTGGATTATTAATAAAAGTTGAAATACAAA
GGCTCGTTACGAGACCAACCAAAGGTTCATAAGAAAACAGAAAATGAAACTTGACAAGGGATATAAGTTTTCGGAAACAGAAACCAGGTGAAGAAGATCA
CCTCCCAAGTGCATGAGACTCGAACAACCACACTTTTGATCACAGAAAAAGCTCAGAAGCTTCCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTC
CTTCTGGATGTTGTAATCTGCAAGAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGA
ATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTCTCAACCTCCAAAGTGATAGTCTTGCCAGTTAGGGTCTTCACAAAAATCTGCATACCACCTCTCA
GACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATATTGTAATCAGCCAAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTG
ATCCGGTGGGATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATAGTATCTGAGCTCTCAACCTCCAAAGTGATGGTTTTACCGGTGAGAGTC
TTAACAAAGATTTGCATACCACCTCTCAGACGAAGCACAAGATGGAGAGTAGACTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCGTCCTCAAGCT
GCTTACCAGCGAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCTTGAATCTTTGCTTTGACATTGTCAATGGTGTCCGAGCTCTCAACCTC
GAGGGTGATGGTTTTGCCTGTCAACGTCTTGACAAAGATCTGCATACCACCTCTTAAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATGTTGTAA
TCAGCCAAGGTGCGGCCATCTTCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTAACAT
TGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCATCTGGC