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Detailed information on CNT30377890


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 1e-135

BLAST vs NONCODE:
NONMEST001181, E-value = 7e-90

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30160455Arabidopsis thalianaPistacia vera68.4939.4884.78552forward
CNT30311003Arabidopsis thalianaCamelina sativa82.5156.4592.33665forward
CNT3060744Arabidopsis thalianaArabidopsis lyrata95.6685.8687.81771forward
CNT30572860Arabidopsis thalianaVitis vinifera71.3462.384.17575forward
CNT30642718Arabidopsis thalianaCannabis sativa72.0849.6283.99581forward

Expression of CNT30377890

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVIVLPVRVFTKICIPPRRRRTR*

>peptide 2 (49 aa)
MRLEQPLLITSQKLRSFHHEDEEPSEESTPSGCCNLQESDHPQAASQRR*

>peptide 3 (54 aa)
MKLQNIDKDKFFPQTEAETKPGEDLTSQVHETRTTTFDHITKAQKLPPRRRRTK*

Sequence

>CNT30377890
GAATGTTTTAACATGCACTTGGATTATTATTAAAAGTTGAAACAGCAACCAAAGGTTCATAAGAAAATAAAAGAAAACAGAAAATGAAACTTCAGAACAT
CGATAAGGATAAGTTTTTCCCGCAGACCGAAGCAGAAACCAAACCAGGTGAAGATCTCACCTCCCAAGTGCATGAGACTCGAACAACCACTTTTGATCAC
ATCACAAAAGCTCAGAAGCTTCCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCAAGAGTCCGACCATCCTCAA
GCTGCTTCCCAGCGAAGATGAGTCTCTGTTGGTCCGGTGGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCAAC
CTCAAGAGTAATGGTTTTTCCGGTAAGGGTCTTCACAAAAATCTGCATACCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTG
TAATCAGCAAGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCTTGGATCTTAGCTTTGA
CATTGTCAATGGTGTCTGAGCTCTCAACCTCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCATACCACCACGGAGACGAAGGACAAG
GTGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCATCTTCAAGCTGCTTACCAGCGAAAATAAGTCTTTGCTGGTCCGGAGGGATT
CCTTCC