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Detailed information on CNT30307544


BLAST search results

BLAST vs Swiss-Prot:
sp|P07369|CB2G_SOLLC, E-value = 6e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30192020Triticum aestivumSecale cereale47.6547.4994.71416forward
CNT30227157Triticum aestivumHordeum vulgare2642.9194.27227forward
CNT30442841Triticum aestivumAegilops tauschii84.08100100734forward
CNT30668825Triticum aestivumTriticum dicoccoides46.6247.7796.31407forward

Expression of CNT30307544

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MCLLAGHKVGGEGPRVVVDRVGEVLSKRLRVVG*

>peptide 2 (97 aa)
MAQRQWITSSSRFLAKVARGLAGERAEVEHAVGAVPRAVGGGGLGRGLAHGDAAAAAEGVGGSGELDRGGGERHGGGGRHCCRMEQSKLLMCGCRCY*

Sequence

>CNT30307544
CCCGAACAATTAATGTCCACTCGTATTCATATGGAAAATGAAAACCATGCATTTCTCATATAGACATTTCATGTTCCAGACGGGCCCTATTTGTAAACAT
CTTTGATAGTGTACAACATCAACGATCAGATATTAATCATACATCCAGAGTACACATATACTCCTGAGAAGTCGATTTTCATGTGTTTACTTGCCGGGCA
CAAAGTTGGTGGCGAAGGCCCACGCGTTGTTGTTGACAGGGTCGGCGAGGTGCTCAGCAAACGCCTCCGGGTCGTCGGCTAGGCCAAGGGGGTCGAAGCT
GCCACCGGGGTAGAGTGGGTCGACGATCTCCCCGAGCGGGCCACCGGCGACGCGGTACCCCTCGACGGCGCCCATGAGCACGACCTGGCAAGCCCAGATG
GCAAGGATGCTTTGAGCGTGGACCAAGCTAGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCCGCCTTGAACCAGACTGCCTCGC
CGAACTTGACGCCGTTGCGAGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATTACCTCGAGCTCGCGGTTCTT
GGCGAAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGGGCCGTACCACGGGCTGTTGGAGGCGGAGGCCTTGGGCGCGGC
CTTGCGCATGGTGATGCGGCCGCCGCCGCCGAGGGCGTAGGAGGCTCCGGCGAGCTTGATCGCGGGGGAGGAGAGCGCCATGGTGGTGGTGGCCGCCATT
GCTGCCGGATGGAACAGAGCAAGCTGCTGATGTGCGGCTGCCGCTGCTACTGATGGGTGGCTGCGTGAGGAAG