CANTATAdb - search

Detailed information on CNT30192020

BLAST search results

BLAST vs Swiss-Prot:
sp|P07370|CB2B_SOLLC, E-value = 1e-106

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30307544	Secale cereale	Triticum aestivum	47.49	47.65	94.71	416	forward
CNT30226790	Secale cereale	Hordeum vulgare	27.97	56.45	92.65	245	forward
CNT30442540	Secale cereale	Aegilops tauschii	60.39	57.31	94.9	529	forward
CNT30668825	Secale cereale	Triticum dicoccoides	88.47	90.96	94.84	775	forward

Expression of CNT30192020

Peptides detected in this lncRNA

>peptide 1 (37 aa)
GTRKKFKYLMFSKPEQLMSTHIHMGNENHAFLNCKHL*

>peptide 2 (69 aa)
MCLLAGHKVSGEGPRVVVDRVGKVVSKVLEGALTGDDGLHKVSKHGEHCKASVLDLLHLELSKRLRVVC*

>peptide 3 (85 aa)
MRTQFSCVYLPGTKLVAKAHALLLTGSARWSARFSRGPLPVTMACTKYPNMENIARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 4 (32 aa)
MKTMHFSIVNIFDSVQHQRSDTNHTSRVHIYS*

Sequence

>CNT30192020
TGGCACCCGAAAAAAATTCAAGTACTTGATGTTTAGCAAACCCGAACAATTAATGTCCACTCATATTCATATGGGAAATGAAAACCATGCATTTCTCAAT
TGTAAACATCTTTGATAGTGTACAACATCAACGATCAGATACTAATCATACATCCAGAGTACACATATACTCATGAGAACTCAATTTTCATGTGTTTACT
TGCCGGGCACAAAGTTAGTGGCGAAGGCCCACGCGTTGTTGTTGACAGGGTCGGCAAGGTGGTCAGCAAGGTTCTCGAGGGGGCCCTTACCGGTGACGAT
GGCTTGCACAAAGTATCCAAACATGGAGAACATTGCAAGGCGTCCGTTCTTGATCTCCTTCACCTTGAGCTCAGCAAACGCCTCAGGGTCGTCTGCTAGG
CCAAGGGGGTCGAAGCTGCCACCCGGGTAGAGTGGGTCGACGATCTCTCCGAGCGGGCCACCAGCAACACGGCCCCCCTCGCTGAAGATCTGGGAGCCAG
CCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCATCGGCAGTGGAT
CACCTCGAGCTCGCGGTTCTTGGCGAAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCAGGGCCGTACCACGGGCTGTTGGAGGCG
GCAGGCTTGGCCGCGGCCTTGCGCATGGTGATGCGGCCGCCGCCGAGGGCGTAGGAGGCTCCGGCGAGCTTGATCGCGGGGGAGGAGAGCGCCATGGTGG
TGGACGCCATTGCTGCCGGATGGAACAGAGCAAGCTGCTGATGTGCGGCTGCCGCTGCTACTGATGGGTGGCTGCG